Sequence
atgc intronic sequence ATGC exonic sequenceCTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTGgtaagatcccaagagctattttcgtggcttaattttactggctcttgcaaatacttgcacatgtaacattagcctacatatttataacatttgactattc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 8
CTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTGgtaagatcccaagagctattttcgtggcttaattttactggctcttgcaaatacttgcacatgtaacattagcctacatatttataacatttgactattc----
|| || || ||||||||| | |||||||| ||||||||||||||||| || || | || ||||| ||| ||||||||||||||||| |||| | | | || || | | ||| ||| | | | | ||||| | | | ||| | ||| ||
CTCACCTTTCGCCATATGCTGCCAAACTTTAATGAGTGTTGGTGGGATAGCATCGTACTAGACATATTAATCTGCAATTGGTTTGgtgagattttttatattttatcagtatttttaatatac-aattctcat---ttcctttaaatgtagattagacaccctcattcagtttattcagaaatcatttt
upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 8
CTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTGgtaagatcccaagagctattttcgtggcttaattttactggctcttgcaaatacttgcacatgtaacattagcctacatatttataacatttgactattc----
|| ||||| ||||||||||| ||||| ||||| ||||| ||||||||||| ||| |||| ||||| || ||||||||||||||||| |||| | | |||| || || | || ||| | || | | || | | | || || | || | | | | |
CTCACTTTTCGCCATATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGCATTGTCCTAGACATATTGATCTGCAATTGGTTTGgtgagatttttat-gtggttttagtaatttt-ctatatgtgcttgtttgggtagcccctga-ataccttcatttagcacatc-agaataccttagtgcttttct
upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 8
CTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTGgtaagatcccaagagctattttcgtggcttaattttactggctcttgcaaatact---tgcacatgtaacattagcctacatatttataacatttgactattc-
|| ||||| || |||||||| ||||| ||||||||||| |||||||| || ||| |||| ||||| || | ||||||||||||||| |||| | | |||| || || | || ||| | ||| || | | | ||||| |||||| | | |||| | ||
CTCACTTTTCGTCATATGTTGCCAAATTTCAATGAGTGCTGGTGGGATAGCATTGTCCTAGACATATTGATATGCAATTGGTTTGgtgagatttttat-gtggttttagtaatttt-ctgtatacgcttgtttgggtaccccctgaatacctgcatttagc--acatatagaaatcattctttttttat
upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 11
CTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTGgtaagatcccaagagctattttcgtggcttaattttactggctcttgcaaatacttgcacatgtaacattagcctacatatttataacatttgactattc---
|||||| || || ||||| ||||| ||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||| | | ||||| | | | ||| | | | | | | || | || ||| | | | || | | | ||||
TATACTTTTCGTCACATGTTGCCAAATTTCAATGAGTGCTGGTGGGACAGTATTATTCTTGACATTTTGATCTGCAATTGGTTTGgtaagagttttggtccaattttatttgact--tttggcaagttgcaaggattgcatgtg-gtttagttaaagcatgagcttatttatcgtatcactacaacca
upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 9
CTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTGgtaagatcccaagagctattttcgtggcttaattttactggctc-ttgcaaatacttgcacatgtaacattagcctacatat----ttat--aacatttgactattc
||||| || || ||||| ||||| ||||| ||||| ||||||||||||||||| || ||||| || ||||||||||||||||||||| | ||||| || | ||| |||| |||||| | ||||| || ||||| | || |||| | | | | || ||
TACACTTTTCGTCACATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGTATTATTCTTGACATCTTGATCTGCAATTGGTTTGgtaagagttttgacccaatttt----atttgacttt--tggcaagttgcaagga-ttgcatgtgatttattagttaaagcatgagcttatttatcgtatcaccatga
upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G15110.1 (Arabidopsis thaliana), 5'ss of exon 9
CTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTGgtaagatcccaagagctattttcgtggcttaattttactggctcttgcaaatacttgcacatgtaacattagcctacatatttataacatttgactattc
||||||| || |||||||||||||| ||||| ||||| ||||||||||||||| | || || || || | ||||| |||||||||| ||| | | ||||| || | || | || || || || | || | | ||||| | || || | | |
GTTACTTTTCGGCATATGTTACCAAATTTCAACGAGTGCTGGTGGGACAGTATTGTTCTTGATATCTTGATATGCAACTGGTTTGgtatgattctta-agctaccttgctattctatatgtagtg-cttttaaacatgtt---atggataacagcttttcttgttttaatcatggtag-------
upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: EFJ13742 (Selaginella moellendorffii), 5'ss of exon 1
CTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTGgtaagatcccaagagctattttcgtggcttaattttactggctcttgcaaatacttgcacatgtaacattagcctacatatttataacatttgactattc
||| |||| ||||||||||| ||||||||||||||||| || |||||| || | | ||||| |||||||||| | | || || | || | |||| | | ||| || | |
---------------ATGCTACCGAACTTCAATGAATGTTGGTGGGACAGTATCATTCTCGACGTTCTTATTTGCAACTGGTTTGgta------cgtaattctcctttgta--tgaaaatgtctggtttt----aattctgtgagtcacag----------------------------------
upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: EFJ29180 (Selaginella moellendorffii), 5'ss of exon 1
CTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTGgtaagatcccaagagctattttcgtggcttaattttactggctcttgcaaatacttgcacatgtaacattagcctacatatttataacatttgactattc
||| |||| ||||||||||| ||||||||||||||||| || |||||| || | | ||||| |||||||||| | | || || | || | |||| | | ||| || | |
---------------ATGCTACCGAACTTCAATGAATGTTGGTGGGACAGTATCATTCTCGACGTTCTTATTTGCAACTGGTTTGgta------cgtaattctcctttgta--tgaaaatgtctggtttt----aattctgtgagccacag----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110360098|gb|EC922718.1|EC922718EST: GTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTG GTATTTGGGCTGGAATGCATACTGTTAGATATTTTGATGGAAGAACATACG
genomic: GTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTGgtaagatccc ... taatatgcagGTATTTGGGCTGGAATGCATACTGTTAGATATTTTGATGGAAGAACATACG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTGgtaagatcccaagagctattttcgtggcttaattttactggctcttgcaaatacttgcacatgtaacattagcctacatatttataacatttgactattc
- - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaata