Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGAAATGCTTGAAAAACATTTAAAAGCCACAGGAGGGAGAGTTTTTACCCGCTTTCCACCAGAGCCAAATGGGTATCTGCATATTGGTCATGCCAAGgtaatcattatatttaattatgaaaattttagattcattatctgttttagtagtcataaattatatgaagatgaaccaaaaataatctttaatccaatggcaattttacag

Basic information

species Vitis vinifera
transcript Vv01s0011g03740.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os01g09000.1 (Oryza sativa), 5'ss of exon 9
AAGGGAAATGCTTGAAAAACATTTAAAAGCCACAGGAGGGAGAGTTTTTACCCGCTTTCCACCAGAGCCAAATGGGTATCTGCATATTGGTCATGCCAAGgtaatcattatatttaattatgaaaattttagattcattatctgttttagtagtcataaattatatgaagatgaaccaaaaataatctttaatccaatggcaattttacag
 | ||| ||  | || |||||  | || || || || || | |||  | ||||| || |||||||| || ||||| ||||| ||||||||||||||||||||  |||  ||||||  ||  |  |||| ||  |||           ||  | | | |   | | ||||||| |  |  | ||     || |||  ||| ||         
TAAGGAGATTTTAGAGAAACACCTTAAGGCAACCGGTGGAAAAGTGATGACCCGTTTCCCACCAGAACCTAATGGATATCTTCATATTGGTCATGCCAAGgtt-tca--atatttgctttcgttaattgtattttcgca------cataccacttaaatcatttttgaagattatgcttatatg---cttcatcttatg-cag--------

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os05g08990.1 (Oryza sativa), 5'ss of exon 9
AAGGGAAATGCTTGAAAAACATTTAAAAGCCACAGGAGGGAGAGTTTTTACCCGCTTTCCACCAGAGCCAAATGGGTATCTGCATATTGGTCATGCCAAGgtaatcattatatttaattatgaaaattttagattcattatctgttttagtagtcataaattatatgaagatgaaccaaaaataatctttaatccaatggcaattttacag
|| ||| ||  | || |||||| | ||||| || ||||| | |||  | ||||||||||| |||||||| ||||| || || |||||||||||||| |||||  | | |||   |          || | | ||||   |  || |   |   ||  |||  || |||| ||||  |  | |  || ||| || ||  |            
AAAGGACATTTTAGAGAAACATCTTAAAGCAACTGGAGGAAAAGTGATGACCCGCTTTCCCCCAGAGCCTAATGGCTACCTTCATATTGGTCATGCTAAGgttgtgactatccctttcacctgtgatgtca-attctgcaaatgct---ggtttctcaaa--atctgaa-atgatgcttacaagatttttgatgcacag------------

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G032049_T01 (Zea mays), 5'ss of exon 9
AAGGGAAATGCTTGAAAAACATTTAAAAGCCACAGGAGGGAGAGTTTTTACCCGCTTTCCACCAGAGCCAAATGGGTATCTGCATATTGGTCATGCCAAGgtaatcattatatttaattatgaaaattttagattcattatctgttttagtagtcataaattatatgaagatgaaccaaaaataatctttaatccaatggcaattttacag
|| ||||||  | ||||||||| | ||||| || ||||| | |||  | ||||| ||||||||||| || ||||| ||||| ||||||||||||||||||||  | || || ||    |   |    |||   | ||  |  | ||  | | |  ||| ||  |   | | |  | || | |                             
AAAGGAAATTTTAGAAAAACATCTTAAAGCAACTGGAGGAAAAGTGATGACCCGTTTTCCACCAGAACCTAATGGATATCTTCATATTGGTCATGCCAAGgttttgataattttcttcttgaatgcatttccttgcacaaaattttaaaattgatatatatgcttacatgcttcatcacacag----------------------------

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G048012_T01 (Zea mays), 5'ss of exon 8
AAGGGAAATGCTTGAAAAACATTTAAAAGCCACAGGAGGGAGAGTTTTTACCCGCTTTCCACCAGAGCCAAATGGGTATCTGCATATTGGTCATGCCAAGg---taatcattatatttaattatgaaaat-tttagattcattatctgttttagtagtcataaattatatgaagatgaaccaaaaataatctttaatccaatggcaattttacag
|| ||||||  | ||||||||| | || || || ||||| | |||  | ||||| ||||||||||| || ||||| ||||| |||||||||||||||||||   | |  ||    || |   ||| |  | ||| ||  |||| | |   || |  ||  || ||  |   ||| |  | || | |                             
AAAGGAAATTTTGGAAAAACATCTCAAGGCAACTGGAGGAAAAGTGATGACCCGTTTTCCACCAGAACCTAATGGATATCTTCATATTGGTCATGCCAAGgttttgagaatctccttcataaatgcatgtctttggacacatttttttaattcgatgt-gtatatgcttacaagcttcatcacatag----------------------------

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA10G41920.1 (Glycine max), 5'ss of exon 9
AAGGGAAATGCTTGAAAAACATTTAAAAGCCACAGGAGGGAGAGTTTTTACCCGCTTTCCACCAGAGCCAAATGGGTATCTGCATATTGGTCATGCCAAGgtaatcattatatttaattatgaaaattttagattcattatctgttttagtagtcataaattatatg-aagatgaaccaaaaataatctttaatccaatggcaattttacag
||||||  | ||||| ||||| |||||||| ||||| || | ||| || |||||||||||||| || || ||||| ||| |||||||||| ||||| || |||   ||||| |||  | ||   |||| |  || |  | | | ||  |  | ||    |||||||  || ||    ||                                 
AAGGGATCTTCTTGACAAACACTTAAAAGCAACAGGTGGAAAAGTCTTGACCCGCTTTCCACCCGAACCTAATGGATATTTGCATATTGGCCATGCAAAAgtatgtattatgtttc-taattggaattgtttatgccgttttttttccaacaatctattattatatttaatatatttcag--------------------------------

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G25350.1 (Arabidopsis thaliana), 5'ss of exon 9
AAGGGAAATGCTTGAAAAACATTTAAAAGCCACAGGAGGGAGAGTTTTTACCCGCTTTCCACCAGAGCCAAATGGGTATCTGCATATTGGTCATGCCAAGgtaatcattatatttaattatgaaaattttagattcattatctgttttagtagtcataaattatatgaagatgaaccaaaaataatctttaatccaatggcaattttacag
|| |||| | ||||| |||||| | || |  || ||||||| ||||| ||| || || || || || |||||||| ||||| |||||||| |||||||||||||  | || ||     |||||   |||  |||   ||   || |   ||| |  |   |||   |   |||     |   |  | |  ||| |  | | | ||  |   
AAAGGAAGTACTTGACAAACATCTCAAGGTGACTGGAGGGAAAGTTTATACTCGGTTCCCCCCTGAACCAAATGGTTATCTTCATATTGGACATGCCAAGgtaagaaatacat---gatatgaggttttgggatgttttgcttgatggtgta-tggttcgttag--ggctatggttttatgttcgtttccaatgc--ttgtacttccag--

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 9
--------------------------AAGGGAAATGCTTGAAAAACATTTAAAAGCCACAGGAGGGAGAGTTTTTACCCGCTTTCCACCAGAGCCAAATGGGTATCTGCATATTGGTCATGCCAAGgtaatcattatatttaattatgaaaattttagattcattatctgttttagtagtcataaattatatgaagatgaaccaaaaataatctttaatccaatggcaattttacag
                          || |||| | ||||| |||||| | || |  || ||||||| ||||| ||| || || || || || |||||||| ||||| |||||||| |||||||||||||  | || ||     |||||   |||  |||   ||   || |   ||| |  |   |||                                                
GGCTCTATTCTCAGATGTAGCAATACAAAGGAAGTACTTGACAAACATCTCAAGGTGACTGGAGGGAAAGTTTATACTCGGTTCCCCCCTGAACCAAATGgttatcttcatattggacatgccaaggtaagaaatacat---gatatgaggttttgggatgttttgcttgatggtgta-tggttcgttag-----------------------------------------------