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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATCGTGCCCCTGAGATAAgtaagtcccattctcgaaccatcccgttgatttgtttgaaatgattaatataatcttctttagttaggtagtttgccaaataattatttttggagaatgctgtctcttaaatcatttagtctctaattctttccttctgcag

Basic information

species Vitis vinifera
transcript Vv01s0011g03350.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g03350.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os12g44330.2 (Oryza sativa), 5'ss of exon 9
AATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATCGTGCCCCTGAGATAAgtaagtcccattctcgaaccatcccgttgatttgtttgaaatgattaatataatcttctttagttaggtagtttgccaaataattatt-tttggagaatgctgtctcttaaatcatttagtctctaattctttccttctgcag
||||| ||||| |||||||||||||| ||||| ||| || |||| |  || ||  ||||||| |||||||||||||| || |||||||| |||||||||||| ||| || ||       | ||   ||| | ||| |       | |||||  | | ||   ||||    || | |  | ||  | |  | ||  | |   | | ||||  |                               
AATGTGCTGAAGCTCTGTGATTTTGGCAATGCAATGCTTGCTGGAATGAACGAGGTTACACCTTATCTTGTGAGCCGTTTCTATCGTGCACCTGAGATAAgtgagttccttttctcgcacttcattttgttgtgtat-------tcaatattct-tcctactgttattctgtctccatactacatgtggtctgatgcacaatttttcttgcag------------------------------

upper sequence: Vv01s0011g03350.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G151236_T03 (Zea mays), 5'ss of exon 8
AATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATCGTGCCCCTGAGATAAgtaagtcccattctcgaaccatcccgttgatttgtttgaaatgattaatataatcttctttagttaggtagtttgccaaataattatttttggagaatgctgtctcttaaatcatttagtctctaattctttccttctgcag
||||| || || || ||||||||||| ||||| ||| || ||||||  |||||| |||| || |||||||| ||||| || ||||| || |||||||| ||| ||| |  |  ||   | ||    ||   || | |    |  ||| ||      || |  |||   |   |    | |||  ||| | |  | |    | | | |  |   || |     ||||    ||   | |||||
AATGTGCTCAAGCTATGTGATTTTGGGAATGCTATGCTTGCTGGTATGAATGAAGTTACGCCTTATCTTGTTAGCCGTTTCTATCGGGCACCTGAGATCAgtgagttctttcatcctgcaatgtttttagattttctttcttacttagtac-----tcatatgttgtctgtatatatatatatatatatatatatatatatatatatatatatatgtgacaactaacatgttttct-tgcag

upper sequence: Vv01s0011g03350.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA20G24820.2 (Glycine max), 5'ss of exon 11
AATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATCGTGCCCCTGAGATAAgtaagtcccattctcgaaccatcccgttgatttgtttgaaatgattaatataatcttctttagttaggtagtttgccaaataattatttttggagaatgctgtctcttaaatcatttagtctctaattctttccttctgcag
|||||  |||| || ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||| || |||||||||||||| || |||||||||||||||         |  || |   | | |||    || | ||| |    |  ||  |  |  |  |||| |   | | | ||| |    |                                              
AATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagtcccatagatttcataatccctaactgtttttttcttgttcaatgtctcatggtt--gccaactgttttggcttttgaatgtttctatgcag---------------------------------------------

upper sequence: Vv01s0011g03350.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA01G20810.1 (Glycine max), 5'ss of exon 11
AATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATCGTGCCCCTGAGATAAgtaagtcccattctcgaaccatcccgttgatttgtttgaaatgattaatataatcttctttagttaggtagtttgccaaataattatttttggagaatgctgtctcttaaatcatttagtctctaattctttccttctgcag
|||    | ||  | ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || |||||||  | ||   | ||  |    |||  |  |   || |  | |  ||  |  |  | | || |    |||      |  ||| | ||||    |      | |  |  ||                            
AATACTTTTAAGTTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTGAAATCAgtaagttactttgcagtacagta--attgcatattcccaagtcctaaccatttttcttgtcattttgaatatttaatgggtttttactgttgggctttcaaacttttctatgcag---------------------------

upper sequence: Vv01s0011g03350.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA10G42220.1 (Glycine max), 5'ss of exon 14
AATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATCGTGCCCCTGAGATAAgtaagtcccattctcgaaccatcccgttgatttgtttgaaatgattaatataatcttctttagttaggtagtttgccaaataattatttttggagaatgctgtctcttaaatcatttagtctctaattctttccttctgcag
|||||  |||| || ||||| ||||| |||||||||||| |||||||||||||| ||||||||||||||||||| || |||||||||||||| || |||||||||| ||||||       ||  |  |||||| |  ||  | || |    || ||  |||  |   || |  ||||  ||   |        |   |  || || || |||  ||   |                      
AATGTTTTGAAGCTTTGTGACTTTGGCAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagttccattc-------attgctatgatttat--gatttcataatcccaaactgtttttttcttgttgaatgcctcatggatgcc----aactgttttggcttttgaatgtttctatgcag------------------

upper sequence: Vv01s0011g03350.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G25840.1 (Arabidopsis thaliana), 5'ss of exon 9
AATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATCGTGCCCCTGAGATAAgtaagtcccat-tctcgaaccatcccgttgatttgtttgaaatgattaatataatcttctttagttaggtagtttgccaaataattatttttggagaatgctgtctcttaaatcatttagtctctaattctttccttctgcag
|||||| | || || ||||||||||||||||| |||||| | || ||||| ||| ||||||| |||||||| || ||||||||  |  ||||||| || |||||||  ||| | | |     |   |  || || |      |||  |||||  |         ||   |  ||| |     |                                                            
AATGTCTTAAAGCTTTGTGATTTTGGTAATGCAATGTTTGCAGGCAAAAACGAAGTTACACCGTATCTTGTTAGTCGCTTTTACAGATCCCCTGAAATTAgtaagtatcatattttgggttgtaaagaggacttttcattggtgaagaatatg-tgactgaagcttctattctttccattgcag-----------------------------------------------------------

upper sequence: Vv01s0011g03350.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G13350.1 (Arabidopsis thaliana), 5'ss of exon 9
AATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATCGTGCCCCTGAGATAAgtaagtcccattctcgaaccatcccgttgatttgtttgaaatgattaatataatcttctttagttaggtagtttgccaaataattatttttggagaatgctgtctcttaaatcatt-tagtctctaattctttccttctgcag
||     | || || ||||| ||||||| ||| |||||| |||||| ||| ||| |||||||||||||||| || ||||| ||  | || || || |||||||||| ||| | | |       | ||||  ||     ||     || |   || ||   | | |   |  | |   |  ||| ||       |   ||   ||||||   ||||| |||                       
AACACGTTAAAGCTTTGTGACTTTGGTAGTGCAATGTTTGCTGGTACAAACGAAGTTACACCATATCTTGTTAGTCGCTTCTACAGAGCTCCAGAAATAAgtaagttccactgttg-------ctgttgtctt-----aatcatctacttggatatttcatggctgtatgttctatta--taacta-------aagctgtactctcttttttcattgtag-----------------------