1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGATTATGGGGAAGCTGCCAAATGGATTATTCGGCTAATGGCAAAATCAGGAACAAAGCAGGACGGTGGCTTCACTGAAGCTCAACTTCAGGAACTCAGAgtatgtaactgatctataatcagaattcacactctcttgaaaaaaatttatattaatcaccatttttttccctgtgcag
species | Vitis vinifera |
transcript | Vv01s0011g03010.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GAACAAAGCAGGACGGTGGCTTCACTGAAGCTCAACTTCAGGAACTCAGA GAAATACAGCCTAAGAAGAAGGGAAATTCGCAAAGGAATGCTCTTGCTTCCEST: gi|29785402|gb|CB342359.2|CB342359
genomic: GAACAAAGCAGGACGGTGGCTTCACTGAAGCTCAACTTCAGGAACTCAGAgtatgtaact ... ccctgtgcagGAAATACAGCCTAAGAAGAAGGGAAATTCGCAAAGGAATGCTCTTGCTTCC
EST: GAACAAAGCAGGTCGGTGGCTTCACTGAAGCTCAACTTCAGGAACTCAGA GAAA-ATCAGCCTAAGAAGAAGGGAAATTCGCAAAGGAATGCTCTTGCTTC
genomic: GAACAAAGCAGGACGGTGGCTTCACTGAAGCTCAACTTCAGGAACTCAGAgtatgtaact ... ccctgtgcagGAAATA-CAGCCTAAGAAGAAGGGAAATTCGCAAAGGAATGCTCTTGCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATTATGGGGAAGCTGCCAAATGGATTATTCGGCTAATGGCAAAATCAGGAACAAAGCAGGACGGTGGCTTCACTGAAGCTCAACTTCAGGAACTCAGAgtatgtaactgatctataatcagaattcacactctcttgaaaaaaatttatattaatcaccatttttttccctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA