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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGGATCAATTGGAGCCGCAGCCGGCCATCGAGCTATTGCTCAGGTTAATAGTGCAGAGATTGCTGAAAATTTGTTTCGATATTCTACACCAGAAGAGgtatgacagttgttttcagttaacaaaggttacatgctttctccatttccttatgacttcatgtattacacctgttgtgttctgtttttgtgtgacag

Basic information

species Vitis vinifera
transcript Vv01s0011g01690.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g01690.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G34890.1 (Glycine max), 5'ss of exon 9
ACATGGATCAATTGGAGCCGCAGCCGGCCATCGAGCTATTGCTCAGGTTAATAGTGCAGAGATTGCTGAAAATTTGTTTCGATATTCTACACCAGAAGAGgtatgacagttgttttcagtta-acaaaggttaca-tgctttctccatttccttatgacttcatgtattacacctgttgtgtt-ctgtttttgtgtgacag
 ||||| ||||| || ||  |||| || |||||||| ||||| |||  ||| ||| |||| |||||||||   || ||||||||| || ||||||||||||||||    || |  | | ||  | || | ||  | ||   | |    ||  || | | ||  |  |||     |||    || |||||| |   ||||||
TCATGGGTCAATAGGGGCAACAGCTGGTCATCGAGCCATTGCACAGAGTAACAGTTCAGAAATTGCTGAAGCCTTATTTCGATATACTGCACCAGAAGAGgtatg----ttttgctgaattgtataatgcttgtactgagctttggccttttttgttattt-gttcattcag--tgtcacattgctgtttgttcttgacag

upper sequence: Vv01s0011g01690.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA20G02690.1 (Glycine max), 5'ss of exon 9
ACATGGATCAATTGGAGCCGCAGCCGGCCATCGAGCTATTGCTCAGGTTAATAGTGCAGAGATTGCTGAAAATTTGTTTCGATATTCTACACCAGAAGAGgtatg-acagttgttttcagttaacaaaggttacatgctttctccatttcc-ttatgacttcatgtattacacctgttgtgttctgtttttgtgtgacag
 ||||| ||||| || ||  |||| || |||||||| ||||| |||  ||| ||| |||| |||||||||   || ||||||||| || |||||||||||||||| |  | ||  ||   | |      ||     |||||  || |||   || |   |||||  | |   |   |||     |||| |||    ||||
TCATGGGTCAATAGGGGCAACAGCTGGTCATCGAGCCATTGCACAGAGTAACAGTTCAGAAATTGCTGAAGCCTTATTTCGATATACTGCACCAGAAGAGgtatgcattgctgaattgtat-agtgcttgtactgagctttggccttttttgttgtttgttcattcagtgt-cacattgctgcttgttcttg----acag