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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGAGCCTTGATGAGATAAAGCTTCTCAAGTTTGTTAACAAGAATGATCCTGCTGACAAGTATCACATTCTCCGTTTGTATGACTACTTTTATTATCGAgtaagttgttctattatttgagtggctacattgtttttttctattctttgggcttaatttttctacattcaagactggtttacacttgtattaatatctc...

Basic information

species Vitis vinifera
transcript Vv01s0011g01590.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os03g51020.1 (Oryza sativa), 5'ss of exon 3
TCAGAGCCTTGATGAGATAAAGCTTCTCAAGTTTGTTAACAAGAATGATCCTGCTGACAAGTATCACATTCTCCGTTTGTATGACTACTTTTATTATCGAgtaagt-tgttctattatttgagtggctacattgtttttttctattc--tttgggcttaatttttctacatt----caagactggtttacacttgtattaatatctc
 |||||||||||||| || ||||| || |||| ||| |||||| |||| |||||||||||||| ||  || | ||| |||| || ||||| |||||||| |||| | || | | || |     |    || ||  || ||   |||   ||      |||   || ||  ||    ||||||   |||| |  | ||  |       
CCAGAGCCTTGATGAAATCAAGCTCCTGAAGTATGTCAACAAGCATGACCCTGCTGACAAGTACCATCTTTTACGTCTGTACGATTACTTCTATTATCGGgtaaatatgatattttgtgctccttcaaacctttcttattgtcatttagttcccatataaagcttttagtttatcacaagacatatttataaatatacaa-------

upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 3
TCAGAGCCTTGATGAGATAAAGCTTCTCAAGTTTGTTAACAAGAATGATCCTGCTGACAAGTATCACATTCTCCGTTTGTATGACTACTTTTATTATCGAgtaagtt-gttctattatttgagtggctacattgtttttttctattctttgggcttaatt--tttctacattcaagactggtttac-acttgtattaatatctc
 ||||||||||||||||| |||||||| |||| |||||||||| ||||||||| ||||||||| ||| || | ||| ||||||| ||||| || ||||| ||||||| |  || ||| |    | | || ||  |||||   | || |||    ||  |    |  |  |||    ||   |  ||  ||||     || | | 
CCAGAGCCTTGATGAGATCAAGCTTCTGAAGTATGTTAACAAGCATGATCCTGGTGACAAGTACCACCTTTTGCGTCTGTATGATTACTTCTACTATCGGgtaagtttgagcttttactc---ttgatagatcatttttcagtgttatttaattttgctcaactgttgaatttgtcacaactccactgcttgctggcatgtgt-

upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G015073_T01 (Zea mays), 5'ss of exon 3
TCAGAGCCTTGATGAGATAAAGCTTCTCAAGTTTGTTAACAAGAATGATCCTGCTGACAAGTATCACATTCTCCGTTTGTATGACTACTTTTATTATCGAgtaagtt-gttctattatttgagtggctacattgtttttttctattctttgggcttaatt--tttctacattcaagactggtttac-acttgtattaatatctc
||| || ||||||||||| |||||||| |||| |||||||||| ||||||| |||||||| || ||| || | ||| ||||||| ||||| || ||||| |||| || |  || ||| |    | | || ||  |||||   | || |||    |  |||   |  |  ||| |  ||   || ||  ||||     || | | 
TCAAAGTCTTGATGAGATCAAGCTTCTGAAGTATGTTAACAAGCATGATCCAGCTGACAAATACCACCTTTTGCGTCTGTATGATTACTTCTACTATCGGgtaaatttgagcttttact---attggtagatcctttttcagtgttatttaatttcgattaagtgttgaatttatcacaacttcactgcttgctgacatgtgt-

upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 3
TCAGAGCCTTGATGAGATAAAGCTTCTCAAGTTTGTTAACAAGAATGATCCTGCTGACAAGTATCACATTCTCCGTTTGTATGACTACTTTTATTATCGAgtaagttgttctattatttgagtggctacattgtttttttctatt--ctttgggcttaatttttctacattcaagactggtttacacttgtattaatatctc-
 || || ||||| ||||| ||||||||||||| ||| || ||| |||||||||| ||||||||||||||||| || || ||||| || || ||||||||||||||| | | |   ||| ||    ||  ||  |||| | | | |  ||||      |||   | | ||||   | |   | |||| || |  || |||||  
CCAAAGTCTTGACGAGATCAAGCTTCTCAAGTATGTCAATAAGCATGATCCTGCAGACAAGTATCACATTCTTCGATTATATGATTATTTCTATTATCGAgtaagtggat-tgccatt-gatcctcttaatacttttatacaagttgctttcaaaacaatcaattttcattttgggcacatatacatttttccta-tatctta

upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 5
TCAGAGCCTTGATGAGATAAAGCTTCTCAAGTTTGTTAACAAGAATGATCCTGCTGACAAGTATCACATTCTCCGTTTGTATGACTACTTTTATTATCGAgtaagttgttctattatttgagtggctacattgtttttttctattctttgggcttaatttttctacattcaagactggtttacacttgtattaatatctc---
 || || ||||| ||||| ||||||||||||| ||| || ||| |||||||||| ||||||||||||||||| || || || || || || ||||||||||||||| | | |  |||| ||    ||  ||  | ||      | ||||      |||   | | ||||  || |   | |||| || |  || | |||    
CCAAAGTCTTGACGAGATCAAGCTTCTCAAGTATGTCAATAAGCATGATCCTGCAGACAAGTATCACATTCTTCGATTATACGATTATTTCTATTATCGAgtaagtggat-tgctatt-gatcctcttaatactattacaaattgctttcaaaacaatcaatattcattttaggcacatatacatttttccta-tgtcttata

upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 3
TCAGAGCCTTGATGAGATAAAGCTTCTCAAGTTTGTTAACAAGAATGATCCTGCTGACAAGTATCACATTCTCCGTTTGTATGACTACTTTTATTATCGAgtaagttgttctattatttgagtggctacattgtttttttctattctttgggcttaatttttctacattcaagactggtttacacttgtattaatatctc----
 || |||||||||||||| |||||||| |||| ||| || ||| |||||||| | |||||||| ||| ||||  | |||||||| |||||||||||| ||||||||   | ||    ||   | | |  | |  ||  |   ||  |||    | |||    | | | |  |    ||  ||    | |||||| |        
CCAAAGCCTTGATGAGATCAAGCTTCTTAAGTATGTCAATAAGCATGATCCTTCAGACAAGTACCACCTTCTAAGATTGTATGATTACTTTTATTATAGAgtaagtgaatttagatgttctattgttctacttattactatcatatttttctttcaat----caatagttgatttaggcatatttgtatattaagagtctacaa

upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA09G29970.1 (Glycine max), 5'ss of exon 3
TCAGAGCCTTGATGAGATAAAGCTTCTCAAGTTTGTTAACAAGAATGATCCTGCTGACAAGTATCACATTCTCCGTTTGTATGACTACTTTTATTATCGAgtaagttgttctattatttgagtggctacattgtttttttctattctttgggcttaatttttctacattcaa-gactggtttacacttgtattaatatctc----------
 || |||||||||||||| |||||||| |||| ||| || ||| |||||||| | |||||||| ||| ||||  | |||||||| ||||| |||||| ||||||||         |||||  ||  |  |||||| |  |   | || |   | |||||||  | || ||||    || ||||  | | | |  ||||             
CCAAAGCCTTGATGAGATCAAGCTTCTTAAGTATGTCAATAAGCATGATCCTTCAGACAAGTACCACCTTCTAAGATTGTATGATTACTTCTATTATAGAgtaagtga-------atttggatg-ttctattgttctacttattgctat---cataattttctttcaatcaatagttgatttaggcatatttgtatattaagagtctacaa

upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G17750.1 (Arabidopsis thaliana), 5'ss of exon 4
TCAGAGCCTTGATGAGATAAAGCTTCTCAAGTTTGTTAACAAGAATGATCCTGCTGACAAGTATCACATTCTCCGTTTGTATGACTACTTTTATTATCGAgtaagttgttctattatttgagtggctacattgtttttttctattctttgggcttaatttttctacattcaagac-tggttta-cacttgtattaatatctc---------------------------------------------------------------------
||| |||||||||||||| || |||||||||| ||| ||| || |||||||||||||||| |||||  | || ||  ||||||||||||| || |  || |||||| | |  ||     || | | ||  || || ||||| |  |   | |  || || | || | ||   |   || | || || ||||   | |   |                                                                      
TCAAAGCCTTGATGAGATCAAACTTCTCAAGTATGTCAACCAGCATGATCCTGCTGACAAATATCATCTCCTTCGACTGTATGACTACTTCTACTTCCGGgtaagtagatagatg--cagaattg-tatctttttcttttcaacaccgggtggata-ttctgctgctttggtgctatgatgtatcaattgttcgattcagtaaagaacatgggacgtgagcctacatcatgatgccattgactgtgattaattggaatctcagttttgcag

upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 3
TCAGAGCCTTGATGAGATAAAGCTTCTCAAGTTTGTTAACAAGAATGATCCTGCTGACAAGTATCACATTCTCCGTTTGTATGACTACTTTTATTATCGAgtaagttgttctattatttgagtgg----ctacattgtttttttctattctttgggcttaatttt-tctacattcaagactggttta-cacttgtattaa---tatctc---------------------------------------------------------------------------
 ||||| ||||| |||||||| ||| | |||| ||| |||||| |||||||||||||||| || ||  |||| || |||||||| |||||||| || || ||||||  ||  ||   ||  |            ||| |  | | |||     | |   |||| | |||   |     ||   |||| |||  || | ||   |||  |                                                                           
CCAGAGTCTTGACGAGATAAAACTTTTGAAGTATGTCAACAAGCATGATCCTGCTGACAAATACCATCTTCTACGGTTGTATGATTACTTTTACTACCGGgtaagtgattacatcccttttgcaaaatttggttttgctactgtatatcaaaagtgaccaattgtgtctttctcttcaacaattttagcacaagtgtgaaccatatgccttttatttaatacctttgcaatatttctctttgtggattgtttggtgtaacggattccctgaatgttctttgcag

upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 3
TCAGAGCCTTGATGAGATAAAGCTTCTCAAGTTTGTTAACAAGAATGATCCTGCTGACAAGTATCACATTCTCCGTTTGTATGACTACTTTTATTATCGAgtaagttgttctatta--tttgagtggctacattgtttttttctat-tctttgggcttaatttttctacattcaagactggtttacacttgtattaatatctc
 ||||| ||||| |||||||| ||| | |||| ||| |||||| |||||||||||||||| || ||  |||| || |||||||| |||||||| || || ||||||  |   ||    ||||      |   || |  | |  ||| ||  | ||   || || | ||  || |     ||    |||||  || |  |    
CCAGAGTCTTGACGAGATAAAACTTTTGAAGTATGTCAACAAGCATGATCCTGCTGACAAATACCATCTTCTACGGTTGTATGATTACTTTTACTACCGCgtaagtgatcacatcccttttgcaaaatttggttttgctatagtatatcaataggggcaaattgtgtaactttatatagggaaaccactta-atcaggaaa--