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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGTAGACAGTGAGGGCCGTCCCATAATGGTTGTTGTGGGAGCACATTTTCTTCTGCGATGTCTGGATCTTGAGCGGTTTGTGTTCCATGTAGTAAAGgtaaaaagattacaatttgcttcagtttgagacattgcttttgcaggcatgctattacatttttcctgttgcagttttagtttttatgcattcattagaa...

Basic information

species Vitis vinifera
transcript Vv01s0011g00870.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os10g30750.1 (Oryza sativa), 5'ss of exon 9
TGGTGTAGACAGTGAGGGCCGTCCCATAATGGTTGTTGTGGGAGCACATTTTCTTCTGCGATGTCTGGATCTTGAGCGGTTTGTGTTCCATGTAGTAAAGgtaaaaagattac-----aatt-tgcttcagtttgagacattgcttttgcaggcatgctattacatttttcctgttgcagttttagtttttatgcattcattagaa
||| || |||||||| || || ||  | ||||||||||| || ||||| |||||||| || ||  |||||||||| ||||||||  | ||||||||||||||||      | |     | || |||  || | ||  |||||   | |  |   ||  |||   |       | ||| ||||| || |   |      ||      
TGGAGTTGACAGTGAAGGACGCCCGGTTATGGTTGTTGTTGGTGCACACTTTCTTCTTCGCTGCTTGGATCTTGAACGGTTTGTTCTACATGTAGTAAAGgtaattgtcctgccctgaagttatgcagcaatatgttacattatgtatataactata-tatcttaaaacatttcttgaagtttcagatggcagtagcacac-----

upper sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA02G12670.1 (Glycine max), 5'ss of exon 10
TGGTGTAGACAGTGAGGGCCGTCCCATAATGGTTGTTGTGGGAGCACATTTTCTTCTGCGATGTCTGGATCTTGAGCGGTTTGTGTTCCATGTAGTAAAGgtaaaaagattacaatttgcttcagtttgagacattgcttttgcaggcat-------gctattacatttttcctgttgcagttttagtttttatgcattcattagaa----------------------------------------------------------------------------------------------
 || |||||||||||||| |||||  | |||||||||||||| || || ||| | ||  ||||||| ||||| ||||| |||||| |  |||| || ||||| |     ||| |   | |||||| |||| |  |     |  || |||        ||||||| |   ||| | ||  |  ||  |  |   | | |    |  ||                                                                                              
AGGGGTAGACAGTGAGGGTCGTCCTGTCATGGTTGTTGTGGGGGCTCACTTTTTGCTTAGATGTCTTGATCTGGAGCGATTTGTGCTTTATGTGGTGAAGgtgattcagttata---tccttcagcttgacatttcctgctgacaagcacaagttcagctattataaacttcatcttaaatgttgggaatgcttacttctcatgaaactcatttatgaccataagttttaatcgttatccttttggcttacgctgtttacttttttaatttactgaaaattgtcttggtgttaaatttcag

upper sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G69340.1 (Arabidopsis thaliana), 5'ss of exon 10
TGGTGTAGACAGTGAGGGCCGTCCCATAATGGTTGTTGTGGGAGCACATTTTCTTCTGCGATGTCTGGATCTTGAGCGGTTTGTGTTCCATGTAGTAAAGgtaaaaagattacaatttgcttcagtttgagacattgcttttgcaggcatgctattacatttttcctgttgcagttttagtttttatgcattcattagaa
|||||| ||||  ||||| | |||  ||||||||||||| ||||| || ||| | ||||||||||| ||||| ||||| |||||  |  ||||  | |||||||  | |  |  |  | | ||  |    |   |     |  | |   | || |  ||    |    |  | ||   | | |  |              
TGGTGTTGACACCGAGGGTCATCCTGTAATGGTTGTTGTAGGAGCTCACTTTTTGCTGCGATGTCTTGATCTGGAGCGTTTTGTACTTTATGTTATTAAGgtaagcacacaatcacatacctcgat---ggttctctaactcactgcagttctgtctcaaaactaacat-acggtgcaaatgtacag-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77580521|gb|DV219155.1|DV219155
EST:     TTCTTCTGCGATGTCTGGATCTTGAGCGGTTTGTGTTCCATGTAGTAAAG                         GAGTTTGAGCCTGTGATACAGAAGCCTTATACTATTGTTTACTTCCACTCA
genomic: TTCTTCTGCGATGTCTGGATCTTGAGCGGTTTGTGTTCCATGTAGTAAAGgtaaaaagat ... taaatttcagGAGTTTGAGCCTGTGATACAGAAGCCTTATACTATTGTTTACTTCCACTCA
EST: gi|45368236|gb|CK906595.1|CK906595
EST:     TTCTTCTGCGATGTCTGGATCTTGAGCGGTTTGTGTTCCATGTAGTAAAG                         GAGTTTGAGCCTGTGATACAGAAGCCTTATACTATTGTTTACTTCCACTCA
genomic: TTCTTCTGCGATGTCTGGATCTTGAGCGGTTTGTGTTCCATGTAGTAAAGgtaaaaagat ... taaatttcagGAGTTTGAGCCTGTGATACAGAAGCCTTATACTATTGTTTACTTCCACTCA