Sequence
atgc intronic sequence ATGC exonic sequenceGAGGTCATCGCTGGAGAAGGAATGATTGTGACTGCAGGGGCCATAGACTGCCATGTGCACTTTATATGCCCTCAATTGGCCTATGAAGCCATATCAAGTGgtgagatttctgcatgactggaagtaccttgcctgtgaagtgttgattttgtcattaacatgttagaatgtattgcaattgcttggcatgtcttgatcat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G465035_T01 (Zea mays), 5'ss of exon 3
GAGGTCATCGCTGGAGAAGGAATGATTGTGACTGCAGGGGCCATAGACTGCCATGTGCACTTTATATGCCCTCAATTGGCCTATGAAGCCATATCAAGTGgtgagatttctgcatgactggaa-gtaccttgc-ctgtgaagtgttgattttgtcattaacatg----ttagaatgtattgcaattgcttggcatgtcttgatcat
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GAAGTTATTGCATATGAAGGCATGATTGTCACTGCTGGTGGCATAGATTGCCATGTCCACTTTATATGTCCTCAGTTGGCAGAAGAGGCAATTGCAAGCGgttaggcttcttgacttctaccatatattaggtgcaatcaaatacacttcatttgattatcatggaaatttcaccattttacaaacaaagggtatcaaat------
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G060656_T01 (Zea mays), 5'ss of exon 3
GAGGTCATCGCTGGAGAAGGAATGATTGTGACTGCAGGGGCCATAGACTGCCATGTGCACTTTATATGCCCTCAATTGGCCTATGAAGCCATATCAAGTGgtgagatttctgcatgactggaa-gtaccttgc-ctgtgaagtgttgattttgtcattaacatg----ttagaatgtattgcaattgcttggcatgtcttgatcat
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GAAGTTATTGCATCTGAAGGCATGATTGTCACTGCTGGTGGCATAGATTGCCATGTCCACTTTATATGTCCTCAGTTGGCAGAAGAGGCAATTGCAAGCGgttaggcttcttgacttctaccatatattaggtgcaatcaaatacacttcatttgattatcatggaaatttcaccattttacaaacaaagggtatcaaat------
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G461569_T01 (Zea mays), 5'ss of exon 9
GAGGTCATCGCTGGAGAAGGAATGATTGTGACTGCAGGGGCCATAGACTGCCATGTGCACTTTATATGCCCTCAATTGGCCTATGAAGCCATATCAAGTGgtgagatttctgcatgactggaagtaccttgcctgtgaagtgttgattttgtcattaacatgttagaatgtattgcaattgcttggcatgtcttgatcat--
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GAAGTTATTGCATCTGAAGGCATGATTGTCACTGCTGGTGGCATAGATTGCCATGTCCACTTTATATGTCCTCAGTTGGCAGAAGAGGCAATTGCAAGCGgttaggcttcttgacttctacca-tatattaggtgcaaccaaatacacttcatttgattatcatggaaatttcaccattttacaaacaaagggt-atcaaat
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA05G27840.1 (Glycine max), 5'ss of exon 9
GAGGTCATCGCTGGAGAAGGAATGATTGTGACTGCAGGGGCCATAGACTGCCATGTGCACTTTATATGCCCTCAATTGGCCTATGAAGCCATATCAAGTGgtgagatttctgcatgactggaagtaccttgcctgtgaagtgttgattttgtcattaacatgttagaatgtattgcaattgcttggcatgtcttgatcat----
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GAAGTTATTGCTGGAGAAGGGTTGATTGTAACAGCAGGGGCTATAGATTGTCACGTGCATTATATATGCCCTCAATTAGTAGATGAGGCCATATCAAGCGgtgagtttt----acaagtagaagcaatttatacagaaagatttcattaccgcaggtatcttttaaatattaacgaatggtcaagacaggttcttttactttct
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G10850.1 (Glycine max), 5'ss of exon 9
GAGGTCATCGCTGGAGAAGGAATGATTGTGACTGCAGGGGCCATAGACTGCCATGTGCACTTTATATGCCCTCAATTGGCCTATGAAGCCATATCAAGTGgtgagatttctgcatgactggaagtaccttgc-ctgtgaagtgttgattttgtcattaacatgttagaatgtattgcaattgcttggcatgtcttgatcat------
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GAAGTTATTGCTGGAGAAGGGTTGATTGTAACAGCTGGGGCTATAGATTGTCATGTGTATTATATATGCCCTCAATTAGTAGATGAGGCCATATCAAGTAgtgagtttt----acaactagaagcaatttatactgaaaagt-ttcattacagca--ggtgcctttaaatattgacgaatggtcaaggaagtgcaggttcttctact
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G67550.1 (Arabidopsis thaliana), 5'ss of exon 9
GAGGTCATCGCTGGAGAAGGAATGATTGTGACTGCAGGGGCCATAGACTGCCATGTGCACTTTATATGCCCTCAATTGGCCTATGAAGCCATATCAAGTGgtgag-atttctgcatgactggaagtaccttgcctgtgaagtgttgattttgtcattaacatgttagaatgtattgcaattgcttggcatgtcttgatcat
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GAGGTTATTGCTGGAGAAGGAATGATTGTAACTGCAGGAGCTATTGATTGTCATGTACATTTCATATGTCCTCAATTGGTGTATGAAGCAGTGTCAAGCGgtgagtagagtagcctgactgaa-----------tataaagcataagtttgcctctaaattcataagtatatgcag-------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720992|gb|FC070359.1|FC070359EST: CCATGTGCACTTTATATGCCCTCAATTGGCCTATGAAGCCATATCAAGTG GCATCACAACATTAGTGGGCGGTGGAACGGGACCTGCTGATGGAACTCGTG
genomic: CCATGTGCACTTTATATGCCCTCAATTGGCCTATGAAGCCATATCAAGTGgtgagatttc ... atatatgtagGCATCACAACATTAGTGGGCGGTGGAACGGGACCTGCTGATGGAACTCGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGGTCATCGCTGGAGAAGGAATGATTGTGACTGCAGGGGCCATAGACTGCCATGTGCACTTTATATGCCCTCAATTGGCCTATGAAGCCATATCAAGTGgtgagatttctgcatgactggaagtaccttgcctgtgaagtgttgattttgtcattaacatgttagaatgtattgcaattgcttggcatgtcttgatcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC