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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACTCGCAGATTGCAGTTCAGGTGCAATTTCATGGACTATAAATGCAAAACATTTTGACCAAGCACTTGGGAAAATCTCTCCATCTGTCTCAAACAAGgtgtgtgttgctctactcaactctatattcaaacatacatgggtatgagatgatgaatggttaaaaattcaaataatctctcctgtttaacttgttttctggcaagcag

Basic information

species Vitis vinifera
transcript Vv01s0010g02600.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32249424|gb|CD715243.1|CD715243
EST:     AACATTTTGACCAAGCACTTGGGAAAATCTCTCCATCTGTCTCAAACAAG                         CAAAAACACTTCTACCAGGTTTTGTCAGAAAGCTTCAAAGCAGAATGAGAA
genomic: AACATTTTGACCAAGCACTTGGGAAAATCTCTCCATCTGTCTCAAACAAGgtgtgtgttg ... tggcaagcagCAAAAACACTTCTACCAGGTTTTGTCAGAAAGCTTCAAAGCAGAATGAGAA
EST: gi|30327377|gb|CD010639.1|CD010639
EST:     AACATTTTGACCAAGCACTTGGGAAAATCTCTCCATCTGTCTCAAACAAG                         CAAAAACACTTCTACCAGGTTTTGTCAGAAAGCTTCAAAGCAGAATGAGAA
genomic: AACATTTTGACCAAGCACTTGGGAAAATCTCTCCATCTGTCTCAAACAAGgtgtgtgttg ... tggcaagcagCAAAAACACTTCTACCAGGTTTTGTCAGAAAGCTTCAAAGCAGAATGAGAA
EST: gi|32271592|gb|CD720751.1|CD720751
EST:     AACATTTTGACCAAGCACTTGGGAAAATCTCTCCATCTGTCTCAAACAAG                         CAAAAACACTTCTACCAGGTTTTGTCAGAAAGCTTCAAAGCAGAATGAGAA
genomic: AACATTTTGACCAAGCACTTGGGAAAATCTCTCCATCTGTCTCAAACAAGgtgtgtgttg ... tggcaagcagCAAAAACACTTCTACCAGGTTTTGTCAGAAAGCTTCAAAGCAGAATGAGAA
EST: gi|30327866|gb|CD011128.1|CD011128
EST:     AACATTTTGACCAAGCACTTGGGAAAATCTCTCCATCTGTCTCAAACAAG                         CAAAAACACTTCTACCAGGTTTTGTCAGAAAGCTTCAAAGCAGAATGAGAA
genomic: AACATTTTGACCAAGCACTTGGGAAAATCTCTCCATCTGTCTCAAACAAGgtgtgtgttg ... tggcaagcagCAAAAACACTTCTACCAGGTTTTGTCAGAAAGCTTCAAAGCAGAATGAGAA
EST: gi|32248801|gb|CD714620.1|CD714620
EST:     AACATTTTGACCAAGCACTTGGGAAAATCTCTCCATCTGTCTCAAACAAG                         CAAAAACACTTCTACCAGGTTTTGTCAGAAAGCTTCAAAGCAGAATGAGAA
genomic: AACATTTTGACCAAGCACTTGGGAAAATCTCTCCATCTGTCTCAAACAAGgtgtgtgttg ... tggcaagcagCAAAAACACTTCTACCAGGTTTTGTCAGAAAGCTTCAAAGCAGAATGAGAA
EST: gi|30324225|gb|CD007487.1|CD007487
EST:     AACATTTTGACCAAGCACTTGGGAAAATCTCTCCATCTGTCTCAAACAAG                         CAAAAACACTTCTACCAGGTTTTGTCAGAAAGCTTCAAAGCAGAATGAGAA
genomic: AACATTTTGACCAAGCACTTGGGAAAATCTCTCCATCTGTCTCAAACAAGgtgtgtgttg ... tggcaagcagCAAAAACACTTCTACCAGGTTTTGTCAGAAAGCTTCAAAGCAGAATGAGAA
EST: gi|30326365|gb|CD009627.1|CD009627
EST:     AACATTTTGACCAAGCACTTGGGAAAATCTCTCCATCTGTCTCAAACAAG                         CAAAAACACTTCTACCAGGTTTTGTCAGAAAGCTTCAAAGCAGAATGAGAA
genomic: AACATTTTGACCAAGCACTTGGGAAAATCTCTCCATCTGTCTCAAACAAGgtgtgtgttg ... tggcaagcagCAAAAACACTTCTACCAGGTTTTGTCAGAAAGCTTCAAAGCAGAATGAGAA