Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGTTTGATGAAAATGGAAAAGCTTTTGGTGTGACATCAGAAGGAGAAACTGCAAAATGCAAAAAAGTTGTATGTGATCCTTCATATTTGCCTGACAAGgtaacttctgaagaagacccccatctatagcttaatcatgttggtcttcatgtgattagcaacatcatcttcattgaaacag

Basic information

species Vitis vinifera
transcript Vv00s0313g00050.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0313g00050.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os03g16900.1 (Oryza sativa), 5'ss of exon 9
AGAGTTTGATGAAAATGGAAAAGCTTTTGGTGTGACATCAGAAGGAGAAACTGCAAAATGCAAAAAAGTTGTATGTGATCCTTCATATTTGCCTGACAAGgtaact-tctgaagaagacccccatct--atagcttaatcatgttggtcttcatgtgattagcaacatcatcttcattgaaacag---
 ||||||||||||||||| ||||| |  ||||| || || || || || |||||||||||||| || ||||| ||||| |||||||| |||||||||||||||  | |   |   |||| |   |    |||      |    ||  |  |  | |   ||   | ||     |||   ||  |    
TGAGTTTGATGAAAATGGGAAAGCATACGGTGTCACTTCCGAGGGGGAGACTGCAAAATGCAAGAAGGTTGTCTGTGACCCTTCATACTTGCCTGACAAGgtatttataccatttagactcattttgagatattcaggttcaatttatggtagtatatctacttaaattcctgtcaacaaatgaacag

upper sequence: Vv00s0313g00050.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT5G09550.1 (Arabidopsis thaliana), 5'ss of exon 8
AGAGTTTGATGAAAATGGAAAAGCTTTTGGTGTGACATCAGAAGGAGAAACTGCAAAATGCAAAAAAGTTGTATGTGATCCTTCATATTTGCCTGACAAGgtaacttctgaagaag---acccccatctatagcttaatcatgttggtcttcatgtgattagcaacatcatcttcat-tgaaacag
|||||||||||    |||||||||| ||||||| || || | |||||||||||| |||||||| |||||||||||||||||||| ||  || |||| ||||||||     |   |    | |  ||   |  ||| | |  |  |  | |  |  |   |   || |   | | | | |    |||
AGAGTTTGATGGTTCTGGAAAAGCTATTGGTGTCACTTCTGCAGGAGAAACTGCTAAATGCAAGAAAGTTGTATGTGATCCTTCTTACCTGTCTGAAAAGgtaaccctaaacccatttcaactgcagtaactgctaagtttttatactgtctagttaccttctaagacggtttccttgtctttcag