1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TAAGGGAAAGGCGTCTTTGTTGGCTGCAGTTGATTACTATGTTAGCATGCATAGTGACATTTTCATCTCTGCTTCTCCGGGAAATATGCACAATGCATTGgtaggtatcctgactaataattacaccaaaacttattcatcatatcaaattgcggcataagctggtccaaattgtaggatttagtgctccactttccttc...
species | Vitis vinifera |
transcript | Vv00s0313g00030.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATAGTGACATTTTCATCTCTGCTTCTCCGGGAAATATGCACAATGCATTG GTGGGACATCGAACTTATGAGAACTTGAAGACAATCAGGCCAAACATGGCAEST: gi|18459384|gb|BM437662.1|BM437662
genomic: ATAGTGACATTTTCATCTCTGCTTCTCCGGGAAATATGCACAATGCATTGgtaggtatcc ... ttggcaacagGTGGGACATCGAACTTATGAGAACTTGAAGACAATCAGGCCAAACATGGCA
EST: ATAGTGACATTTTCATCTCTGCTTCTCCGGGAAATATGCACAATGCATTG GTGGGACATCGAACTTATGAGAACTTGAAGACAATCAGGCCAAACATGGCAEST: gi|30301036|gb|CB977830.1|CB977830
genomic: ATAGTGACATTTTCATCTCTGCTTCTCCGGGAAATATGCACAATGCATTGgtaggtatcc ... ttggcaacagGTGGGACATCGAACTTATGAGAACTTGAAGACAATCAGGCCAAACATGGCA
EST: ATAGTGACATTTTCATCTCTGCTTCTCCGGGAAATATGCACAATGCATTG GTGGGACATCGAACTTATGAGAACTTGAAGACAATCAGGCCAAACATGGCAEST: gi|110703560|gb|EE080515.1|EE080515
genomic: ATAGTGACATTTTCATCTCTGCTTCTCCGGGAAATATGCACAATGCATTGgtaggtatcc ... ttggcaacagGTGGGACATCGAACTTATGAGAACTTGAAGACAATCAGGCCAAACATGGCA
EST: ATAGTGACATTTTCATCTCTGCTTCTCCGGGAAATATGCACAATGCATTG GTGGGACATCGAACTTATGAGAACTTGAAGACAATCAGGCCAAACATGGCAEST: gi|37188131|gb|CF607482.1|CF607482
genomic: ATAGTGACATTTTCATCTCTGCTTCTCCGGGAAATATGCACAATGCATTGgtaggtatcc ... ttggcaacagGTGGGACATCGAACTTATGAGAACTTGAAGACAATCAGGCCAAACATGGCA
EST: ATAGTGACATTTTCATCTCTGCTTCTCCGGGAAATATGCACAATGCATTG GTGGGACATCGAACTTATGAGAACTTGAAGACAATCAGGCCAAACATGGCAEST: gi|351034043|gb|FQ447960.1|FQ447960
genomic: ATAGTGACATTTTCATCTCTGCTTCTCCGGGAAATATGCACAATGCATTGgtaggtatcc ... ttggcaacagGTGGGACATCGAACTTATGAGAACTTGAAGACAATCAGGCCAAACATGGCA
EST: ATAGTGACATTTTCATCTCTGCTTCTCCGGGAAATATGCACAATGCATTG GTGGGACATCGAACTTATGAGAACTTGAAGACAATCAGGCCAAACATGGCAEST: gi|71871778|gb|DT020833.1|DT020833
genomic: ATAGTGACATTTTCATCTCTGCTTCTCCGGGAAATATGCACAATGCATTGgtaggtatcc ... ttggcaacagGTGGGACATCGAACTTATGAGAACTTGAAGACAATCAGGCCAAACATGGCA
EST: ATAGTGACATTTTCATCTCTGCTTCTCCGGGAAATATGCACAATGCATTG GTGGGACATCGAACTTATGAEST: gi|161720195|gb|FC066766.1|FC066766
genomic: ATAGTGACATTTTCATCTCTGCTTCTCCGGGAAATATGCACAATGCATTGgtaggtatcc ... ttggcaacagGTGGGACATCGAACTTATGA
EST: ATAGTGACATTTTCATCTCTGCTTCTCCGGGAAATATGCACAATGCATTG GTGGGACATCGAACTTATGAGAACTTGAAGACAATCAGGCCAAACATGGCA
genomic: ATAGTGACATTTTCATCTCTGCTTCTCCGGGAAATATGCACAATGCATTGgtaggtatcc ... ttggcaacagGTGGGACATCGAACTTATGAGAACTTGAAGACAATCAGGCCAAACATGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGGGAAAGGCGTCTTTGTTGGCTGCAGTTGATTACTATGTTAGCATGCATAGTGACATTTTCATCTCTGCTTCTCCGGGAAATATGCACAATGCATTGgtaggtatcctgactaataattacaccaaaacttattcatcatatcaaattgcggcataagctggtccaaattgtaggatttagtgctccactttccttc
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