Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACTTCAAGCGAAGAAGAATCGATTGAGATTCTGGACAAACTATGTTCCCCCACCCACAAATTCGAAGGCAATTCACGACCAGAATTTTACTGGAAAAgtgggtagttggtcaacataatgcttacgtaaatcctatcttttataaatggaattttaccctaattttatgtccatctcatttggcctttttag

Basic information

species Vitis vinifera
transcript Vv00s0283g00020.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os02g32350.2 (Oryza sativa), 5'ss of exon 8
AGAACTTCAAGCGAAGAAGAATCGATTGAGATTCTGGACAAACTATGTTCCCCCACCCACAAATTCGAAGGCAATTCACGACCAGAATTTTACTGGAAAAgtgggtagttggtcaacataatgcttacgtaaatcctatcttttataaatggaattttaccctaattttatgtccatctcatt-tggcctttttag
 || ||||| || |||||| | |  |||||| | ||||||   | |   || |||   ||||| |||||| |||| ||||||||||| || |||||||||||||||     ||   || ||    |   |  | | |   |  |   | || |  |      |   ||| |||  |||   |  | |         
TGAGCTTCAGGCTAAGAAGGACCAGTTGAGAATTTGGACAGGATTTAAGCCACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAAgtgggttccctgttctcacaagtagtgtattcaacatga-tcatgcgattgaagctaa---tttgctttgtgttgatcctttcatag---------

upper sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G136296_T03 (Zea mays), 5'ss of exon 9
AGAACTTCAAGCGAAGAAGAATCGATTGAGATTCTGGACAAACTATGTTCCCCCACCCACAAATTCGAAGGCAATTCACGACCAGAATTTTACTGGAAAAgtgggtagttggtcaacataatgcttacgtaaatcctatcttttataaatggaattttaccctaatt-ttatgtccatctcat-ttggcctttttag--
|||||| || || || ||| ||| ||||||| ||||||||   |     || ||    ||||| |||||| | ||||| |||||||| ||||||||||||||| ||  |   |   |   |||     ||  || | ||| | |  | ||  |||| ||   || |   ||| |   |  ||| |||  || ||     
AGAACTACAGGCTAAAAAGGATCAATTGAGAATCTGGACAGGGTTCAAGCCACCTGTGACAAACTCGAAGCCCATTCATGACCAGAAATTTACTGGAAAAgtgtgtcttacattctc-cgatgacagtgtgtattc-atcatgttcacat--aattgtatgatagtaactattttttttccatgttgatctcttcgcag

upper sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G00910.1 (Glycine max), 5'ss of exon 9
AGAACTTCAAGCGAAGAAGAATCGATTGAGATTCTGGACAAACTATGTTCCCCCACCCACAAATTCGAAGGCAATTCACGACCAGAATTTTACTGGAAAAgtgggtagttggtcaaca------taatgcttacgtaaatcctatctttta-taaatggaatttt---accctaattttatgtccatctcatttggcctttttag-------------------------------------------------------------------------------------------
||| ||||| || ||||| ||  | || |   | |||||||||||||| || ||| | |||||||| |||||||| || |||||||||||||| ||||| ||      ||    |||       | || |  |  ||||    ||||  |  | |||   ||          |   ||| || |||   |   || | || |  |                                                                                           
AGAGCTTCAGGCAAAGAAAAACAGGTTAAAGATTTGGACAAACTATGTACCACCAGCAACAAATTCAAAGGCAATACATGACCAGAATTTTACAGGAAAGgtaaaattttctctaaccattggtttatcccaaattaaaaaggatctcatggtgaataatatccctgaggatttggtttttgaccaaagccaatgacgttgtgtgatccacatatattgtagttgttgtattagtttatcccaaatattcaatcttcattcatttaagtctattttttggacttatctttttccag

upper sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA05G33320.1 (Glycine max), 5'ss of exon 9
AGAACTTCAAGCGAAGAAGAATCGATTGAGATTCTGGACAAACTATGTTCCCCCACCCACAAATTCGAAGGCAATTCACGACCAGAATTTTACTGGAAAAgtgggtagttggtcaaca------taatgcttacgtaaatcctatctttta-taaatggaattttaccctaattttatgtccatctcatttggcctttttag
||| ||||| || ||||| ||  | || |   | |||||||||||||| || ||  | |||||||| |||||||| || |||||||||||||| ||||| ||   |  ||    || |      | || |  |  ||||    ||||  |  | |||   | | | ||  |   ||  ||   | | |     |||  | | 
AGAGCTTCAGGCTAAGAAAAACAGGTTAAAGATTTGGACAAACTATGTACCACCGGCAACAAATTCAAAGGCAATACATGACCAGAATTTTACAGGAAAGgtaaatttttctcgaaaaattggtttatcccaaattaaaagggatctcatggtgaataataatatccctgagaatttggtt--tttaaccaaacctagtgac

upper sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA06G17050.4 (Glycine max), 5'ss of exon 9
AGAACTTCAAGCGAAGAAGAATCGATTGAGATTCTGGACAAACTATGTTCCCCCACCCACAAATTCGAAGGCAATTCACGACCAGAATTTTACTGGAAAAgtgggtagttggtcaacataatgcttacgtaaatc--ctatcttttataaatggaattttaccctaattttatgtccatctcatttggcctttttag
 || || || || |||||  |  | || ||  | |||||||||||||| || || ||  ||||||| |||||||||||  ||||||||||| |||| || ||   || ||| ||||     |  ||| |  || |    |   || ||  ||  ||   || |  | ||| |  |   | | |              
GGAGCTGCAGGCTAAGAAAGACAGGTTAAGGATGTGGACAAACTATGTACCACCGCCTTCAAATTCAAAGGCAATTCATAACCAGAATTTTTCTGGCAAGgtaaata-ttgctcaatcatttatttatgccaaacagtcagtcttcattcatataaacatatcacattttaacttgagttttacag-----------

upper sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA04G38010.1 (Glycine max), 5'ss of exon 9
AGAACTTCAAGCGAAGAAGAATCGATTGAGATTCTGGACAAACTATGTTCCCCCACCCACAAATTCGAAGGCAATTCACGACCAGAATTTTACTGGAAAAgtgggtagttggtcaacataatgcttacgtaaatc--ctatcttttataaatggaattttaccctaattttatgtccatctcatttggcctttttag
 ||||| || || |||||  |  | || ||  | |||||||||||||| || || ||  ||||||| |||||||||||  ||||||||||| |||| || ||   || | | ||||     |  ||| |  ||      |   || ||  ||  ||   ||    | ||| |  |   | | |              
TGAACTGCAGGCTAAGAAAGACAGGTTAAGGATGTGGACAAACTATGTACCACCGCCTTCAAATTCAAAGGCAATTCATAACCAGAATTTTTCTGGCAAGgtaaataat-gctcaattatttatttatgccaaatagtcagtcttcattcatataagcatataacattttaacttgagttttacag-----------

upper sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT5G07350.2 (Arabidopsis thaliana), 5'ss of exon 9
AGAACTTCAAGCGAAGAAGAATCGATTGAGATTCTGGACAAACTATGTTCCCCCACCCACAAATTCGAAGGCAATTCACGACCAGAATTTTACTGGAAAAgtgggtagttggtcaacataatgcttacgtaaatcctatcttttataaatggaattttaccc--taattttatgtccatctcatttggcctttttag
||||||||||   |||||  ||    | | | | ||| ||||||| ||||| ||| | ||||| || ||||||||||| |||||||| ||||| |||||    ||||  | |||  || ||    |   ||||| || || ||      |||   || |     |  |||||| ||  | |                
AGAACTTCAATGCAAGAAAGATAAGGTTAAAATGTGGGCAAACTACGTTCCTCCAGCTACAAACTCTAAGGCAATTCATGACCAGAACTTTACGGGAAA----Ggtaacttgtctgcagaaattctttctaaatactgtccttctcctttggttattgagttattggttttatctctctttag--------------