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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCTCCAGCTTGTTTCTTTCCACACAGTCTCTAAAGGATATTGGGGTGAATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgcctttctataattgttcaaaatttttcttgtatttgagttgcaagtcgtgcattttgagcaaataccagagttcaacaaaatgatataattattg...

Basic information

species Vitis vinifera
transcript Vv00s0225g00130.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0225g00130.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os07g01760.1 (Oryza sativa), 5'ss of exon 7
GGAGCTCCAGCTTGTTTCTTTCCACACAGTCTCTAAAGGATATTGGGGTGAATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtt-tgcctttctataattgttcaaaatttttcttgtatttgagttgcaagtcgtgcattttgagcaaataccagagttcaacaaaatgatataattattg
|||  | ||||| ||||||||||| || || || |||||||||||||| || |||||||| ||||| || || ||||| ||||| ||  |||||||  ||||  |||| || || |||  |   |    | ||      | | | | ||| |      | || |  | |||      |  ||   |   | | ||  ||  
GGAAGTTCAGCTGGTTTCTTTCCATACTGTGTCAAAAGGATATTGGGGGGAGTGTGGACAACGTGGAGGGTATTTTGAAATGACAAATCTTCCTCCCAAGgtgatgccattatagaat-atgtgattgatctcaaaagatcgtgattcaaatttctagtctttactatatagatttatagaatgcagctacacaaaaatgt

upper sequence: Vv00s0225g00130.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM5G840582_T01 (Zea mays), 5'ss of exon 8
GGAGCTCCAGCTTGTTTCTTTCCACACAGTCTCTAAAGGATATTGGGGTGAATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgcctttctataattgttcaaaatttttcttgtatttgagttgcaagtcgtgcattttgagcaaataccag-agttcaacaaaatgatataattattg---
|||| | |||||||||||||||||||| || || ||||| || ||||| || |||||||| |||||||||||||| || ||||| ||  |||||||| |||| |   ||  |||    || ||  |||| ||  | || | | |||      || |  ||  |      |   | || | ||   |||  ||   | ||||   
GGAGGTTCAGCTTGTTTCTTTCCACACTGTGTCCAAAGGGTACTGGGGAGAGTGTGGACAACGTGGTGGATACTTCGAAATGACAAATCTTCCTCCAAAGgtat---ttgttattgcagtgcagcatttatca-gaatgtcacttgtcccaagtaccattgaaaagttcataggcaggtaaagtcaattgtagtgtaattgtaa

upper sequence: Vv00s0225g00130.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S215_28V6.1 (Physcomitrella patens), 5'ss of exon 8
GGAGCTCCAGCTTGTTTCTTTCCACACAGTCTCTAAAGGATATTGGGGTGAATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgcctttctataattgttcaaaatttttcttgta-tttg-agttgcaagt-cgtgcattttgagcaaataccagagttcaacaaaatgatataattattg-------------------------------------------------------
 |  ||  || | ||||| |||||||| || || || || |     || || ||||||||||| |||||||||||||| |||||||| ||||  ||  |||||  |||  | || |||    | | |||  ||   | |||| || ||    | | |  ||| |   | ||||| |     |||  || |    |  ||   |                                                       
AGCTCTGGAGTTGGTTTCATTCCACACGGTGTCGAAGGGTTTCCTCGGAGAGTGTGGACAGCGAGGTGGATACTTTGAAATGACCAATATTCACCCCAAGgtt--cctacccatcattcaaaacactttgcctcacaatttgtagatgtgttttcttttattctttccgaatactact-cccaatgaagtacgctccttcaagctgtatcaatataacatgcagttctctatctcatttctggttttgtaacgttcag

upper sequence: Vv00s0225g00130.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: PP1S64_220V6.1 (Physcomitrella patens), 5'ss of exon 8
GGAGCTCCAGCTTGTTTCTTTCCACACAGTCTCTAAAGGATATTGGGGTGAATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgcctttctataattgttcaaaatttttct-tgtatttgagttgcaagtcgtgcattttgagcaaat-accagagttcaacaaa-atgatataattattg----------------------------------------------------------------
 |   |  || | |||||||| |||||||| || || || |     || ||||||||||||||||||||||||||||| ||||||||| |||  ||  ||||||    ||   || |  ||||  ||||  || || | |  ||  | |  || | |  | |   |  ||     | | |||| | |  | |  |    ||||                                                                
AGCCTTGGAGTTGGTTTCTTTTCACACAGTGTCAAAGGGCTTCCTTGGAGAATGTGGACAGCGTGGTGGATACTTTGAAATGACCAACTTTCACCCCAAGgttt----ttgactactacttcaccatttcgctgtggaatcaagacgaatatcttcctgtgtagtcgcattgttcgtgctcaatacatgtcaagtgtcaattgtaggatcccttcatggtagttctcggtatcaagtattatgtctaactgctcttcttatgtccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30299046|gb|CB975840.1|CB975840
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACAAACATTCCTCCACAG                         ACTGGTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|32270153|gb|CD719312.1|CD719312
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|110389517|gb|EC954364.1|EC954364
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|29785334|gb|CB342233.2|CB342233
EST:     CAACATTCCTTCACAG                         TCTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCCAATGTC
genomic: CAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|28960785|gb|CB340400.1|CB340400
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|71877299|gb|DT026354.1|DT026354
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|32247739|gb|CD713558.1|CD713558
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|351023682|gb|FQ448233.1|FQ448233
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|18458318|gb|BM436596.1|BM436596
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|294966650|gb|GW839641.1|GW839641
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|32248182|gb|CD714001.1|CD714001
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|29784204|gb|CB344645.2|CB344645
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|77581124|gb|DV219488.1|DV219488
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|27580138|gb|CB002833.1|CB002833
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|28958445|gb|CB339217.1|CB339217
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|33409332|gb|CF214959.1|CF214959
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|27582523|gb|CB005218.1|CB005218
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAA
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAA
EST: gi|27579398|gb|CB002093.1|CB002093
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|110690265|gb|EE067211.1|EE067211
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|349808113|gb|FQ403300.1|FQ403300
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATAT
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATAT
EST: gi|30325827|gb|CD009089.1|CD009089
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|351037170|gb|FQ457003.1|FQ457003
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|33409522|gb|CF215149.1|CF215149
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGGTGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|30251685|gb|CB969418.1|CB969418
EST:     AGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|110377606|gb|EC942684.1|EC942684
EST:     GTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: GTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|110361483|gb|EC924957.1|EC924957
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|110378242|gb|EC943362.1|EC943362
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|30299121|gb|CB975915.1|CB975915
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACAAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|18459781|gb|BM438059.1|BM438059
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|110372740|gb|EC936928.1|EC936928
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|26263684|gb|CA814747.1|CA814747
EST:     GGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: GGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|110417553|gb|EC983619.1|EC983619
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|32250342|gb|CD716161.1|CD716161
EST:     GGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: GGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|349820046|gb|FQ404768.1|FQ404768
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGT
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGT
EST: gi|26265676|gb|CA816739.1|CA816739
EST:     GTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: GTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|33409576|gb|CF215203.1|CF215203
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|349823894|gb|FQ415305.1|FQ415305
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAANGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|110362940|gb|EC926503.1|EC926503
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|110707090|gb|EE083187.1|EE083187
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|110379655|gb|EC944867.1|EC944867
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|351025435|gb|FQ435127.1|FQ435127
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|110377565|gb|EC942640.1|EC942640
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|110687378|gb|EE064734.1|EE064734
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|71857816|gb|DT006871.1|DT006871
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|71874055|gb|DT023110.1|DT023110
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|29784845|gb|CB341320.2|CB341320
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|32248822|gb|CD714641.1|CD714641
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|71874947|gb|DT024002.1|DT024002
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
EST: gi|30299262|gb|CB976056.1|CB976056
EST:     AATGTGGACAGCGTGGTGGATACTTTGAGATGACAAACATTCCTCCACAG                         ACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC
genomic: AATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgccttt ... gatgttgcagACTGTTGATGAGATTTATAAGGTTGCATCAATATCACTCAGTCCAAATGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGCTCCAGCTTGTTTCTTTCCACACAGTCTCTAAAGGATATTGGGGTGAATGTGGACAGCGTGGTGGATACTTTGAGATGACCAACATTCCTCCACAGgtttgcctttctataattgttcaaaatttttcttgtatttgagttgcaagtcgtgcattttgagcaaataccagagttcaacaaaatgatataattattg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaaa