Sequence
atgc intronic sequence ATGC exonic sequenceTAATGTTCATAACAATGCATTCTATGCTGAAGAGAAACTGCTTAGGTCTGAAATGCAAGCAATGCGTGATTGCAATCCTTTATCTGCCCGACACTGGATTgtaagtttccatatcttatagaattttttctttccattctctctcccctcccaaccccaaccactcccactcctctgaaggcatatttaactgacaagca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0225g00090.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GRMZM2G147884_T01 (Zea mays), 5'ss of exon 9
TAATGTTCATAACAATGCATTCTATGCTGAAGAGAAACTGCTTAGGTCTGAAATGCAAGCAATGCGTGATTGCAATCCTTTATCTGCCCGACACTGGATTgtaagtttccatatcttatagaattttttctttccattctctctcccctcccaaccccaaccactcccactcctctgaaggcatattta--actgacaagca--
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TAATGTGCATAATAATGCTTTCTATGCTGAAGAGAAGTTGCTCAAATCTGAGTTGCAAGCAATGCGTGATTGCGACCCTTCATCTGCCCGCCACTGGATTgtaagag-ctgtttttcttg---ttttaaccttttgttattcctaccagtactgttgtaccattacattatgcatttaatacctgttcattatctttatgctta
upper sequence: Vv00s0225g00090.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G38990.1 (Glycine max), 5'ss of exon 9
TAATGTTCATAACAATGCATTCTATGCTGAAGAGAAACTGCTTAGGTCTGAAATGCAAGCAATGCGTGATTGCAATCCTTTATCTGCCCGACACTGGATTgtaagtttccatatcttatagaattttttctttccattctctctcccctcccaaccccaaccactcccactcctctgaaggcatatttaactgacaagca-
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TAATGTTCATAACAATGCATTTTATGCTGAAGAAAAACTGCTTAAATCAGAAATGGAAGCAATGCGTGATTGTGACCCTTTATCTGCTCGTCACTGGATTgtaagttcttactgattttgaaaccccctctccccaggaaaaaaaatattcagatattaatttttttccctggg-tgaatatttctgctgtcactgtccac
upper sequence: Vv00s0225g00090.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA18G20800.1 (Glycine max), 5'ss of exon 9
TAATGTTCATAACAATGCATTCTATGCTGAAGAGAAACTGCTTAGGTCTGAAATGCAAGCAATGCGTGATTGCAATCCTTTATCTGCCCGACACTGGATTgtaagtttccatatcttatagaattttttctttccattctctctcccctcccaaccccaaccactcccactcctctgaaggcatatttaactgacaagca-
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-AATGTTCATAACAATGCATTTTATGCCGAGGAAAAACTGCTTAAATCAGAATTGGAAGCAATGCGTGATTGTGATCCTTTATCTGCTCGTCACTGGATTGtaagttcttactgattttgaaaccccctcttcccaggaaaaaaaaatattcagatattaaattttttgcctgggtgaatatttctgctgtcactgtccac
upper sequence: Vv00s0225g00090.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA02G04360.1 (Glycine max), 5'ss of exon 9
TAATGTTCATAACAATGCATTCTATGCTGAAGAGAAACTGCTTAGGTCTGAAATGCAAGCAATGCGTGATTGCAATCCTTTATCTGCCCGACACTGGATTgtaagtttcc-------atatcttatagaattttttctttccattctctctcccctcccaacccca-accactcccactcctctgaaggcatatttaactgacaagca
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TAATGTTCACAACAATGCATTTTATGCTGAGGAAAAACTGCTTAAATCAGAATCGGAAGCAATGCGTGATTGTAACCCTTTATCTGCTCGACATTGGATTgtaagttccttccacttgtatattataaaaaaaaaaaataacaaaaagaagaagcaatgaaacatacaaaattccaatttttcttggcgaatatttccac--------
upper sequence: Vv00s0225g00090.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: EFJ14061 (Selaginella moellendorffii), 5'ss of exon 8
TAATGTTCATAACAATGCATTCTATGCTGAAGAGAAACTGCTTAGGTCTGAAATGCAAGCAATGCGTGATTGCAATCCTTTATCTGCCCGACACTGGATTgtaagt---ttccatatcttatagaattttttctttccattctctctcccctcccaaccccaaccactcccactcctctgaaggcatatttaactgacaagca
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CAATCCTCATTGCAACGCATTCTACGCCAAGGAGACGCTGCTAAAATCCGAAATGCAAGCTCAGAGAGACTGCAATCCTTTATCTGCACGACACTGGATAgtaagtagactcaacaacgaagaaaaaacttcatgctcgacttctatgacaatgcag----------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|83275167|gb|DV939263.1|DV939263EST: CAAGCAATGCGTGATTGCAATCCTTTATCTGCCCGACACTGGATT ATCAGAAACACAAGAACTGTCAACAGGACTGGGCAGCTAACAGGTTACAAG
genomic: CAAGCAATGCGTGATTGCAATCCTTTATCTGCCCGACACTGGATTgtaagtttcc ... tatcattcagATCAGAAACACAAGAACTGTCAACAGGACTGGGCAGCTAACAGGTTACAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAATGTTCATAACAATGCATTCTATGCTGAAGAGAAACTGCTTAGGTCTGAAATGCAAGCAATGCGTGATTGCAATCCTTTATCTGCCCGACACTGGATTgtaagtttccatatcttatagaattttttctttccattctctctcccctcccaaccccaaccactcccactcctctgaaggcatatttaactgacaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcccac