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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCATACGACACATTTGCCTTGACTCGATTGATCCATCCTTGGCGATTGGGTTCTACTGCCGAGACAAAGgtttgttggttcttgctctttggctgaatatggtgattttggtggtgaaatacatcagagcttttattgattatagtttttcttttctgtattgttggcag

Basic information

species Vitis vinifera
transcript Vv00s0215g00030.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0215g00030.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA18G48380.1 (Glycine max), 5'ss of exon 8
TATCATACGACACATTTGCCTTGACTCGATTGATCCATCCTTGGCGATTGGGTTCTACTGCCGAGACAAAGgtttgttggttcttgctctttggctgaatatggtgattttggtggtgaaatacatcagagcttt-tattgattatagtttttcttttctgtattgttggcag-
  | ||  | |||||   ||| || || ||||||||||||||||| ||||| || ||||||||||||||||||||| |||||  |  |  |    | ||       ||  |   ||  ||    |||  |||||| |||||| | |  |   ||   |     | | |||||| 
-GTTATGAGGCACATACCCCTAGATTCAATTGATCCATCCTTGGCTATTGGATTTTACTGCCGAGACAAAGGtttgctggttactcttgctaatttcaagtgttcaatacttacggctaa---tatccaagctttctattgactctcatcactccaataatggtggctggcaga

upper sequence: Vv00s0215g00030.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA09G38000.1 (Glycine max), 5'ss of exon 8
TATCATACGACACATTTGCCTTGACTCGATTGATCCATCCTTGGCGATTGGGTTCTACTGCCGAGACAAAGgtttgttggttcttgctctttggctgaatatggtgattt--tggtggtgaaatacatcagagcttt-tattgattatagtttttcttttctgtattgttggcag
||| ||  | |||||   ||| || || |||||||||||||| || ||||| || ||||||||||||||||||||| |||||  |     |||  | | |   ||  ||   |  |  ||    | |||  |||||| |||||    |  |   |||  |     | ||||||||
TATTATGAGGCACATACCCCTAGATTCAATTGATCCATCCTTAGCTATTGGATTTTACTGCCGAGACAAAGgtttgctggttact----cttgcttaatttcagtagttcaataattatggctaatatctaagctttctattgtccctcatcactctaataatggtggttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110393955|gb|EC959561.1|EC959561
EST:     TGACTCGATTGATCCATCCTTGGCGATTGGGTTCTACTGCCGAGACAAAG                         ATGATTTTGATGATTTTTGTATCCGGGCTTCCAAGCTAGCAGATGAATCAA
genomic: TGACTCGATTGATCCATCCTTGGCGATTGGGTTCTACTGCCGAGACAAAGgtttgttggt ... ttgttggcagATGATTTTGATGATTTTTGTATCCGGGCTTCCAAGCTAGCAGATAAATCAA
EST: gi|110387776|gb|EC952472.1|EC952472
EST:     TGACTCGATTGATCCATCCTTGGCGATTGGGTTCTACTGCCGAGACAAAG                         ATGATTTTGATGATTTTTGTATCCGGGCTTCCAAGCTAGCAGATGAATCAA
genomic: TGACTCGATTGATCCATCCTTGGCGATTGGGTTCTACTGCCGAGACAAAGgtttgttggt ... ttgttggcagATGATTTTGATGATTTTTGTATCCGGGCTTCCAAGCTAGCAGATAAATCAA
EST: gi|30136940|gb|CB922278.1|CB922278
EST:     TGACTCGATTGATCCATCCTTGGCGATTGGGTTCTACTGCCGAGACAAAG                         ATGATTTTGATGATTTTTGTATCCGGGCTTCCAAGCTAGCAGATGAATCAA
genomic: TGACTCGATTGATCCATCCTTGGCGATTGGGTTCTACTGCCGAGACAAAGgtttgttggt ... ttgttggcagATGATTTTGATGATTTTTGTATCCGGGCTTCCAAGCTAGCAGATAAATCAA
EST: gi|30251919|gb|CB969652.1|CB969652
EST:     TGACTCGATTGATCCATCCTTGGCGATTGGGTTCTACTGCCGAGACAAAG                         ATGATTTTGATGATTTTTGTATCCGGGCTTCCAAGCTAGCAGATGAATCAA
genomic: TGACTCGATTGATCCATCCTTGGCGATTGGGTTCTACTGCCGAGACAAAGgtttgttggt ... ttgttggcagATGATTTTGATGATTTTTGTATCCGGGCTTCCAAGCTAGCAGATAAATCAA
EST: gi|30251996|gb|CB968635.1|CB968635
EST:     TGACTCGATTGATCCATCCTTGGCGATTGGGTTCTACTGCCGAGACAAAG                         ATGATTTTGATGATTTTTGTATCCGGGCTTCCAAGCTAGCAGATGAATCAA
genomic: TGACTCGATTGATCCATCCTTGGCGATTGGGTTCTACTGCCGAGACAAAGgtttgttggt ... ttgttggcagATGATTTTGATGATTTTTGTATCCGGGCTTCCAAGCTAGCAGATAAATCAA
EST: gi|33401751|gb|CF207378.1|CF207378
EST:     TGACTCGATTGATCCATCCTTGGCGATTGGGTTCTACTGCCGAGACAAAG                         ATGATTTTGATGATTTTTGTATCCGGGCTTCCAAGCTAGCAGATGAATCAA
genomic: TGACTCGATTGATCCATCCTTGGCGATTGGGTTCTACTGCCGAGACAAAGgtttgttggt ... ttgttggcagATGATTTTGATGATTTTTGTATCCGGGCTTCCAAGCTAGCAGATAAATCAA