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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATTCAAGACTGGGGATGAACGGCAAGTGTATGCGATTGAGCATCCAGAACCTCTTTTACATTTTGCACTCTGTTCAGGAAGTCATTCTGACCCAGCGgtacttcactatctataatctgttccttggtcctttaattcaataattaggtgcttgtgaatatgttgcattggtgttttctattgcttactgaatactc...

Basic information

species Vitis vinifera
transcript Vv00s0207g00150.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA02G06790.1 (Glycine max), 5'ss of exon 10
AAAATTCAAGACTGGGGATGAACGGCAAGTGTATGCGATTGAGCATCCAGAACCTCTTTTACATTTTGCACTCTGTTCAGGAAGTCATTCTGACCCAGCGgtacttcactat-ctataatctgttccttggtcctttaattcaataattaggtgcttgtgaatatgttgcattggtgttttctattgcttactgaatactc----
|||||||||  |||| |||| ||| ||||  ||  ||||||||| ||| || |||||| |||| |||||||||||||||||||  |||||||| ||||||||||||   | | || |  |||||   || ||   | | ||   | |||||   ||||| | | |||  | |     ||||  | |||||    | |  |     
AAAATTCAAAGCTGGAGATGGACGACAAGCATACCCGATTGAGCGTCCTGAGCCTCTTCTACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCAGCGgtacttatttttactcttctctgtgtgtttgtatgtgatttt--tcattaga--cttgtaagt-tgtaacgtctccatttttcaatgctttaacattttttttgg

upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA16G25820.1 (Glycine max), 5'ss of exon 9
AAAATTCAAGACTGGGGATGAACGGCAAGTGTATGCGATTGAGCATCCAGAACCTCTTTTACATTTTGCACTCTGTTCAGGAAGTCATTCTGACCCAGCGgtactt-cactatctataatctgttccttggtccttta-attcaataattaggt--gcttgtgaatatgttgcattggtgttttctattgcttactgaatactc
|||||||||  |||| |||| ||| | ||  ||  |||| |||| ||| || |||||| |||  |||||||||||||||||||  ||||||||||| |||||||||   ||| || |  || |  |   ||   |||  ||   ||  ||   |   ||||| | | |||  |||     ||||  | ||||||     |    
AAAATTCAAAGCTGGAGATGGACGACGAGCATACCCGATCGAGCGTCCTGAGCCTCTTCTACTCTTTGCACTCTGTTCAGGAAACCATTCTGACCCTGCGgtacttattctaactcttctcagacctcagggtgtttgcatgtgatttttcattagacttgtaagt-tgtaacatctccatttttcaatgcttaacatttt---

upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA01G38680.1 (Glycine max), 5'ss of exon 12
AAAATTCAAGACTGGGGATGAACGGCAAGTGTATGCGATTGAGCATCCAGAACCTCTTTTACATTTTGCACTCTGTTCAGGAAGTCATTCTGACCCAGCGgtacttcactatctataatctgtt-----ccttggtcctttaattcaataattaggtgcttgtgaatatgttgcattggtgttttctattgcttactgaatactc
|||||||||  |||| |||  ||| ||||  |||||  | |||||  | |||||||||| ||| |||||||||||||||||||  |||||||| || |||||| | |   |  | | ||  |         | | | ||    |||   ||    |    | ||||||  ||  ||| || |   | ||| |||| |  ||    
AAAATTCAAAGCTGGAGATAGACGACAAGCCTATGCACTGGAGCAAGCTGAACCTCTTTCACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCTGCGgtattccctcaattctcattggcgagcaatttcgttactcattttcgcaaagcttgattatatgaataatttatatttgtttgggcaattcctta-tacat----

upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA11G06610.1 (Glycine max), 5'ss of exon 6
AAAATTCAAGACTGGGGATGAACGGCAAGTGTATGCGATTGAGCATCCAGAACCTCTTTTACATTTTGCACTCTGTTCAGGAAGTCATTCTGACCCAGCGgtacttcactatctataatctgttccttggtcctttaattcaataattaggtgcttgtgaatatgttgcattggtgttttctattgct-tactgaatactc
|||||||||  |||| |||  ||| ||||  |||||  | |||||  | || ||||||| ||| |||||||||||||||||||  |||||||| || |||||| | |  ||  | | ||  ||       | | |||  ||| |  |     |||||   |||||    |||| | |||  |   ||  | |   ||||  
AAAATTCAAAGCTGGAGATAGACGACAAGCCTATGCACTGGAGCAAGCTGAGCCTCTTTCACACTTTGCACTCTGTTCAGGAAACCATTCTGATCCTGCGgtattcccttaattctcatgggtgtgcaatttcgtta-ctcatttttgcaaagcttgattatatgaataattgatatttgtttgggcaattccttatacat