Sequence
atgc intronic sequence ATGC exonic sequenceTGGAATTGGTATTGTGAAATTGATGGGACGTAGCAGTGGATTTATAACCATGCAAGCATCCCTAGCTAGTGGACAAATTGATATATGTTTGATCCCAGAGgtatttttccagacatttattggagatgcatattcatttgatactggttactgacactcgatatttgcacttctaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G38450.1 (Glycine max), 5'ss of exon 9
TGGAATTGGTATTGTGAAATTGATGGGACGTAGCAGTGGATTTATAACCATGCAAGCATCCCTAGCTAGTGGACAAATTGATATATGTTTGATCCCAGAGgtatttttccagacattta-ttggagatgcatattca-tttgatactggtta-ctgacactcgatatttgcac--ttctaag-------------------
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TGGAATTGGCGTTGTGAAATTGATGGGCCGTAGCAGTGGATTCATAGCAATGCAAGCATCCCTATCTAGTGGACAGGTTGACATATGCCTGATCCCTGAGgtatataagatacaatttagttggatggtcttgttttctttcatactgataaacttatac-cagttttgacatggtttgaaggtacctttcaatttacatg
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA01G03040.1 (Glycine max), 5'ss of exon 9
TGGAATTGGTATTGTGAAATTGATGGGACGTAGCAGTGGATTTATAACCATGCAAGCATCCCTAGCTAGTGGACAAATTGATATATGTTTGATCCCAGAGgtatttttccagacatttattggagatgcatattcatt-tgatactggt-tactgacactcgatatt--tgcacttctaag
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TGGAATTGGTATTGTGAAATTGATGGGCCGTGACAGTGGATTCATAGCAATGCATGCTACCTTAGCTAGTGGACAGATTGACATATGTCTGATTCCTGAGgtatatatgataaaaattggtcagaacactctttctttgtcatactgatatactgatgcaagttcttgttgtggttcaaag
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA18G21720.1 (Glycine max), 5'ss of exon 10
TGGAATTGGTATTGTGAAATTGATGGGACGTAGCAGTGGATTTATAACCATGCAAGCATCCCTAGCTAGTGGACAAATTGATATATGTTTGATCCCAGAGgtatttttccagacattta-ttggagatgcatattcatt-tgatactggtta-ctgacactcgatatt-tgcacttctaag
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TGGAATTGGGGTTGTGAAATTGATGGGCCGTAGCAGTGGATTCATAGCAATGCAAGCATCCCTGTCTAGTGGACAGGTTGACATATGCCTGATTCCTGAGgtatctaagataaaatttagttggatggtcttgttttctgttatactgataaacttatacaagttttgacatgggttgaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71859409|gb|DT008464.1|DT008464EST: TGCAAGCATCCCTAGCTAGTGGACAAATTGATATATGTTTGATCCCAGAG GTACCATTTCATTTACATGGCCCTCATGGTGTCCTGAGTCACCTGAAGTAT
genomic: TGCAAGCATCCCTAGCTAGTGGACAAATTGATATATGTTTGATCCCAGAGgtatttttcc ... cacttctaagGTACCATTTCATTTACATGGCCCTCATGGTGTCCTGAGTCACCTGAAGTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGAATTGGTATTGTGAAATTGATGGGACGTAGCAGTGGATTTATAACCATGCAAGCATCCCTAGCTAGTGGACAAATTGATATATGTTTGATCCCAGAGgtatttttccagacatttattggagatgcatattcatttgatactggttactgacactcgatatttgcacttctaag
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