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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCATGGCTGCTTCATGAATTTGATGAGGATTTCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTATATACGACCTGAGgtattagtaatcaatcagcagcctccttacccaagtcctgaccttttaaatattatgttactgatttttgtacttgtcatgcaacag

Basic information

species Vitis vinifera
transcript Vv00s0181g00130.t01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122688581|gb|EC921621.1|EC921621
EST:     TCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTACATACGACCTGAG                         GCCAATTTTTCATCCCTTGAGAGCCTGATAGCAAAGATTCATGAGGATAGG
genomic: TCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTATATACGACCTGAGgtattagtaa ... catgcaacagGCCAATTTTTCATCCCTTGAGAGCCTGATAGCAAAGATTCATGAGGATAGG
EST: gi|122688643|gb|EC920309.1|EC920309
EST:     TCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTACATACGACCTGAG                         GCCAATTTTTCATCCCTTGAGAGCCTGATAGCAAAGATTCATGAGGATAGG
genomic: TCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTATATACGACCTGAGgtattagtaa ... catgcaacagGCCAATTTTTCATCCCTTGAGAGCCTGATAGCAAAGATTCATGAGGATAGG
EST: gi|122688583|gb|EC921683.1|EC921683
EST:     TCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTACATACGACCTGAG                         GCCAATTTTTCATCCCTTGAGAGCCTGATAGCAAAGATTCATGAGGATAGG
genomic: TCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTATATACGACCTGAGgtattagtaa ... catgcaacagGCCAATTTTTCATCCCTTGAGAGCCTGATAGCAAAGATTCATGAGGATAGG
EST: gi|122688609|gb|EC923003.1|EC923003
EST:     TCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTACATACGACCTGAG                         GCCAATTTTTCATCCCTTGAGAGCCTGATAGCAAAGATTCATGAGGATAGG
genomic: TCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTATATACGACCTGAGgtattagtaa ... catgcaacagGCCAATTTTTCATCCCTTGAGAGCCTGATAGCAAAGATTCATGAGGATAGG
EST: gi|122688550|gb|EC920300.1|EC920300
EST:     TCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTACATACGACCTGAG                         GCCAATTTTTCATCCCTTGAGAGCCTGATAGCAAAGATTCATGAGGATAGG
genomic: TCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTATATACGACCTGAGgtattagtaa ... catgcaacagGCCAATTTTTCATCCCTTGAGAGCCTGATAGCAAAGATTCATGAGGATAGG
EST: gi|122688646|gb|EC920398.1|EC920398
EST:     TCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTACATACGACCTGAG                         GCCAATTTTTCATCCCTTGAGAGCCTGATAGCAAAGATTCATGAGGATAGG
genomic: TCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTATATACGACCTGAGgtattagtaa ... catgcaacagGCCAATTTTTCATCCCTTGAGAGCCTGATAGCAAAGATTCATGAGGATAGG
EST: gi|122688569|gb|EC921114.1|EC921114
EST:     TCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTACATACGACCTGAG                         GCCAATTTTTCATCCCTTGAGAGCCTGATAGCAAAGATTCATGAGGATAGG
genomic: TCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTATATACGACCTGAGgtattagtaa ... catgcaacagGCCAATTTTTCATCCCTTGAGAGCCTGATAGCAAAGATTCATGAGGATAGG
EST: gi|122688616|gb|EC923325.1|EC923325
EST:     TCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTACATACGACCTGAG                         GCCAATTTTTCATCCCTTGAGAGCCTGATAGCAAAGATTCATGAGGATAGG
genomic: TCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTATATACGACCTGAGgtattagtaa ... catgcaacagGCCAATTTTTCATCCCTTGAGAGCCTGATAGCAAAGATTCATGAGGATAGG
EST: gi|122688561|gb|EC920714.1|EC920714
EST:     TCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTACATACGACCTGAG                         GCCAATTTTTCATCCCTTGAGAGCCTGATAGCAAAGATTCATGAGGATAGG
genomic: TCTATGGCGAGGAATTACATCTTGTCATTGTTGGCTATATACGACCTGAGgtattagtaa ... catgcaacagGCCAATTTTTCATCCCTTGAGAGCCTGATAGCAAAGATTCATGAGGATAGG