Sequence
atgc intronic sequence ATGC exonic sequenceGGTGCAGTGGCATGCTTTATGCTTGGGTTTGTTTGCATCAATTATAGCACCCTTTGGTGGCTTTTTTGCTAGTGGTTTCAAGAGAGCTTTCAAAATCAAGgtccacccttgttttaaacacagttgcttaaagttatactaatgtgaaatgagctccctatctccacctcacaacaataaattaaaaataaggatttctctgaatttttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g01220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os10g17990.1 (Oryza sativa), 5'ss of exon 9
GGTGCAGTGGCATGCTTTATGCTTGGGTTTGTTTGCATCAATTATAGCACCCTTTGGTGGCTTTTTTGCTAGTGGTTTCAAGAGAGCTTTCAAAATCAAGgtccacccttgttttaaacacagttgcttaaagttatactaatgtgaaatgagctccctatctccacctcacaacaataaattaaaaataaggatttctctgaatttttacag
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TATTCAGTGGCATGCCTTAGCTCTTGGCTTGTTTGCTTCAATAATAGCACCATTTGGAGGGTTTTTCGCTAGTGGTTTTAAAAGAGCTTTCAAATTCAAGgtacgcatctatt----atcttttggaaaaaaaatatttcaatatcgaaatcttattcagtgtatacttttcag---------------------------------------
upper sequence: Vv19s0090g01220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g55360.1 (Oryza sativa), 5'ss of exon 9
GGTGCAGTGGCATGCTTTATGCTTGGGTTTGTTTGCATCAATTATAGCACCCTTTGGTGGCTTTTTTGCTAGTGGTTTCAAGAGAGCTTTCAAAATCAAGgtccacccttgttttaaacacagttgcttaaagtta--tactaatgtgaaatgagctccctatctccacctcacaacaataaattaaaaataaggatttctctgaatttttacag
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TGTGCAGTGGCATGCTTTAGCACTAGGTTTGTTTGCATCAATAATAGCACCTTTTGGAGGTTTCTTTGCAAGTGGCTTCAAGAGGGCCTTTAAAATAAAGgtaagcagtgcctccttttgc--ttcctcgggattacttcttgaagtatggaaactgtactgtttttatttctgttgatcactcttttgatgtggtag-----------------
upper sequence: Vv19s0090g01220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G452529_T02 (Zea mays), 5'ss of exon 9
GGTGCAGTGGCATGCTTTATGCTTGGGTTTGTTTGCATCAATTATAGCACCCTTTGGTGGCTTTTTTGCTAGTGGTTTCAAGAGAGCTTTCAAAATCAAGgtccacccttgttttaaacacagttgcttaaagttatactaatgtgaaa-tgagctccctatctccacctcacaacaataaattaaaaataaggatttctctgaatttttacag
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TGTGCAGTGGCATGCTTTAGCCCTAGGTTTATTTGCATCAATAATAGCACCATTTGGAGGATTTTTTGCGAGTGGCTTCAAGAGGGCTTTTAAAATTAAGgtatacaccacttc--------gttgtttgcatcaataatattgttttactcaaattgatatatctttttttta-caaaaaatgtag---------------------------
upper sequence: Vv19s0090g01220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM5G825110_T01 (Zea mays), 5'ss of exon 9
GGTGCAGTGGCATGCTTTATGCTTGGGTTTGTTTGCATCAATTATAGCACCCTTTGGTGGCTTTTTTGCTAGTGGTTTCAAGAGAGCTTTCAAAATCAAGgtccacccttgttttaaacacagttgcttaaagttatactaatgtga-aatgagctccctatctccacctcacaacaataaattaaaaataaggatttctctgaatttttacag
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TGTGCAGTGGCATGCTTTAGCCCTAGGTTTATTTGCGTCAATAATAGCACCATTCGGAGGATTTTTTGCGAGTGGCTTCAAGAGGGCTTTCAAAATAAAGgtatacacc-gcttca-------ttgtttgcatcaataatattgtcttactcaaattgatatatcttcttttttacaa-aaactgtag--------------------------
upper sequence: Vv19s0090g01220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G062416_T02 (Zea mays), 5'ss of exon 4
GGTGCAGTGGCATGCTTTATGCTTGGGTTTGTTTGCATCAATTATAGCACCCTTTGGTGGCTTTTTTGCTAGTGGTTTCAAGAGAGCTTTCAAAATCAAGgtccacccttgttttaaacacagttgcttaaagt-tatactaatgtgaaatgagctccctatctccac-ctcacaacaataaattaaaaataaggatttctctgaatttttacag
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CGTTCAATGGCATGCATTAGCTCTTGGCTTGTTTGCTTCAATAATAGCACCATTTGGTGGCTTTTTTGCAAGTGGATTCAAGAGGGCATTCAAATTTAAGgtgcttagtttgtttggaattatttgttgaaaatatgtatcaccttcaaa--atctcactatgtttatacattcag---------------------------------------
upper sequence: Vv19s0090g01220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G46440.1 (Glycine max), 5'ss of exon 9
GGTGCAGTGGCATGCTTTATGCTTGGGTTTGTTTGCATCAATTATAGCACCCTTTGGTGGCTTTTTTGCTAGTGGTTTCAAGAGAGCTTTCAAAATCAAGgtccacccttgttttaaacacagttgcttaaagttatactaat-gtgaaatgagctccctatctccacctcacaacaataaattaaaaataaggatttctctgaatttttacag
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AGTACAGTGGGATGCCTTGTGGATGGGACTATTTGCATCAATTATAGCACCATTTGGAGGTTTTTTTGCTAGTGGTTTCAAAAGAGCTTTTAAAATCAAAgtctgttcttgctctttatacaagacatttattttgtacccatcaccctttttccattcactttgaaactcccaaacatagcatatag-catcgatctctttcaatgattacag
upper sequence: Vv19s0090g01220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G02210.1 (Glycine max), 5'ss of exon 7
GGTGCAGTGGCATGCTTTATGCTTGGGTTTGTTTGCATCAATTATAGCACCCTTTGGTGGCTTTTTTGCTAGTGGTTTCAAGAGAGCTTTCAAAATCAAGgtccacccttgttttaaacac-agttgcttaaagttatactaatgtgaaatgagctccctatctccacctcacaacaataaattaaaaataaggatttctctgaatttttacag
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AGTACAGTGGCATGCCTTGTGGATGGGACTATTTGCGTCAATAATAGCACCATTTGGAGGTTTTTTTGCTAGTGGCTTCAAAAGAGCTTTTAAAATCAAAgtatgttcttgctctttatactagacatttattttgcatccatcatcctttttccattcactttgaaactcccaaacatag--caatagcattgatctctttgaatgattacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110424073|gb|EC990426.1|EC990426EST: CCTTTGGTGGCTTTTTTGCTAGTGGTTTCAAGAGAGCTTTCAAAATCAAG GATTTTGGAGATAGTATTCCTGGACATGGTGGAATTACAGACAGAATGGAT
genomic: CCTTTGGTGGCTTTTTTGCTAGTGGTTTCAAGAGAGCTTTCAAAATCAAGgtccaccctt ... atttttacagGATTTTGGAGATAGTATTCCTGGACATGGTGGAATTACAGACAGAATGGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGCAGTGGCATGCTTTATGCTTGGGTTTGTTTGCATCAATTATAGCACCCTTTGGTGGCTTTTTTGCTAGTGGTTTCAAGAGAGCTTTCAAAATCAAGgtccacccttgttttaaacacagttgcttaaagttatactaatgtgaaatgagctccctatctccacctcacaacaataaattaaaaataaggatttctctgaatttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT