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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTACATCAATAATTGATGGCTTGAAGAGGTTGTACATTCAGAAGCTCAAGCCATTAGAGGTTACATATCGTTTTAACGATTTTGCATCCCCCTTGTTGgtaagcgagaaatacacccagcttttaattgctttcatcctcagaaatagcaaaataatcttgattctaatgaatgtttgtttgatttacatctattgctatattttaaaccatggacaatgatatataatgagcttatcacttgctgttgatgtgttatttgttgcag

Basic information

species Vitis vinifera
transcript Vv19s0090g01130.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g01130.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G46350.2 (Glycine max), 5'ss of exon 8
CGTTACATCAATAATTGATGGCTTGAAGAGGTTGTACATTCAGAAGCTCAAGCCATTAGAGGTTACATATCGTTTTAACGATTTTGCATCCCCCTTGTTGgtaagcgagaaatacacccagcttttaattgctttcatcctcagaaatagcaaaataatcttgattctaatgaatgtttgtttg---atttacatctattgctatattttaaaccatggacaatgatatataatgagcttatcacttgctgttgatgtgttatttgttgcag
 || |||||||||||||| |||||||||||  | |||||||||||| | ||||||||||| ||||| || |||||||| ||||||| |||||| ||  |||| ||  ||               ||| ||  |||       ||||||  | |  || ||  ||||       |  ||| ||||   | | |  | | || |||| |||||||  ||  |||| |||||| ||| || || |   ||| |  | ||   |||  | ||| ||
TGTGACATCAATAATTGACGGCTTGAAGAGACTCTACATTCAGAAGTTGAAGCCATTAGAAGTTACTTACCGTTTTAATGATTTTGTATCCCCATTACTGgtcagtaag---------------ttattttgttt-------agaaatgactagctactccagatttactatcacctttctttgtgcagtcatgt-tgttactatgttttaaat-atctacaaagatatacaattagtttctttattgattgtaattctttacatattgtag

upper sequence: Vv19s0090g01130.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G20290.2 (Arabidopsis thaliana), 5'ss of exon 8
CGTTACATCAATAATTGATGGCTTGAAGAGGTTGTACATTCAGAAGCTCAAGCCATTAGAGGTTACATATCGTTTTAACGATTTTGCATCCCCCTTGTTGgtaagcgagaaatacacccagcttttaattgctttcatcctcagaaatagcaaaataatcttga-ttctaatgaatgtttgtttgatttacatctattgctatattttaaaccatggacaatgatatataatgagcttatcacttgctgttgatgtgttatttgttgcag
||| ||||| ||| | |||||| ||||||||||||||||||||||||| |||||| | || ||  ||||||| ||||||||||||| |||||| |||||||| ||   |  ||   |  |  ||     | || |     |    ||   | ||||| | |||| ||||||   || ||||      ||  |    || || | ||||    | | |                                                     
CGTAACATCTATAGTGGATGGCCTGAAGAGGTTGTACATTCAGAAGCTGAAGCCACTTGAAGTAGCATATCGGTTTAACGATTTTGTATCCCCTTTGTTGgtgagttgggcat-tgctta--ttggtgctcctatggcgttatttaagttccaaatactattgaattctaaactatatttgacca--ttgaactagttact-tgttttttttcttag-----------------------------------------------------