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TACAATTACAAAGGAGGTCCATGCTATCGGTGCCTTTTTCCTACTCCACCACCAACAACAGCATGTCAAAGATGTTCAGATAGTGGAGTTTTAGGAGTAGgtaagctgcagttttgctaacatgtccaatattaaattactagtctgctaacttgcctaccaaaccttgtaaaatatgatcttgagagggatcttttcct...
species | Vitis vinifera |
transcript | Vv19s0090g01020.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ACCAACAACAGCATGTCAAAGATGTTCTGATAGTGGAGTTTTAGGAGTAG TTCCTGGTATCATTGGCTGTCTCCAAGCCCTAGAGGCTATAAAGATTGCAAEST: gi|349815971|gb|FQ403612.1|FQ403612
genomic: ACCAACAACAGCATGTCAAAGATGTTCAGATAGTGGAGTTTTAGGAGTAGgtaagctgca ... tgttttatagTTCCTGGTATCATTGGCTGTCTCCAAGCCCTAGAGGCTATAAAGATTGCAA
EST: ACCAACAACAGCATGTCAAAGATGTTCTGATAGTGGAGTTTTAGGAGTAG TTCCTGGTATCATTGGCTGTCTCCAAGCCCTAGAGGCTATAAAGATTGCAAEST: gi|349813558|gb|FQ413792.1|FQ413792
genomic: ACCAACAACAGCATGTCAAAGATGTTCAGATAGTGGAGTTTTAGGAGTAGgtaagctgca ... tgttttatagTTCCTGGTATCATTGGCTGTCTCCAAGCCCTAGAGGCTATAAAGATTGCAA
EST: ACCAACAACAGCATGTCAAAGATGTTCTGATAGTGGAGTTTTAGGAGTAG TTCCTGGTATCATTGGCTGTCTCCAAGCCCTAGAGGCTATAAAGATTGCAAEST: gi|351013602|gb|FQ429743.1|FQ429743
genomic: ACCAACAACAGCATGTCAAAGATGTTCAGATAGTGGAGTTTTAGGAGTAGgtaagctgca ... tgttttatagTTCCTGGTATCATTGGCTGTCTCCAAGCCCTAGAGGCTATAAAGATTGCAA
EST: ACCAACAACAGCATGTCAAAGATGTTCTGATAGTGGAGTTTTAGGAGTAG TTCCTGGTATCATTGGCTGTCTCCAAGCCCTAGAGGCTATAAAGATTGCAAEST: gi|351020215|gb|FQ445822.1|FQ445822
genomic: ACCAACAACAGCATGTCAAAGATGTTCAGATAGTGGAGTTTTAGGAGTAGgtaagctgca ... tgttttatagTTCCTGGTATCATTGGCTGTCTCCAAGCCCTAGAGGCTATAAAGATTGCAA
EST: ACCAACAACAGCATGTCAAAGATGTTCTGATAGTGGAGTTTTAGGAGTAG TTCCTGGTATCATTGGCTGTCTCCAAGCCCTAGAGGCTATAAAGATTGCAG
genomic: ACCAACAACAGCATGTCAAAGATGTTCAGATAGTGGAGTTTTAGGAGTAGgtaagctgca ... tgttttatagTTCCTGGTATCATTGGCTGTCTCCAAGCCCTAGAGGCTATAAAGATTGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACAATTACAAAGGAGGTCCATGCTATCGGTGCCTTTTTCCTACTCCACCACCAACAACAGCATGTCAAAGATGTTCAGATAGTGGAGTTTTAGGAGTAGgtaagctgcagttttgctaacatgtccaatattaaattactagtctgctaacttgcctaccaaaccttgtaaaatatgatcttgagagggatcttttcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaggga