Sequence
atgc intronic sequence ATGC exonic sequenceCAGAGACCATATATGGTTTTGGGAACACTTCGGCAACAATTGCTATATCCTACATGGGCAGAAGATGTAATTCCCGTGACAGATGGTGATGAACCAGATGgtatgtagttttaaatttaattttagagagaagggacagttgatggttagtttcttataaatagaagtttgaaagaagaaaaatcttttgatttataact...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0085g01190.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g11946.2 (Oryza sativa), 5'ss of exon 8
CAGAGACCATATATGGTTTTGGGAACACTTCGGCAACAATTGCTATATCCTACATGGGCAGAAGATGTAATTCCCGTGACAGATGGTGATGAACCAGATGgtatgtagttttaaatttaattttagagagaagggacagttgatggttagtttcttataaatagaagtttgaaagaagaaaaatcttttgatttataact--------
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---AGACCATATATGGTTTTGGGAACCCTTCGTCAGCAATTGCTCTATCCTACATGGACTGAAGATGTTTGTCATTCATCAAATAATGATCCTCAAAGTA-CAGgtaattattcctata-ttgcacgatgaacaatcaagtgtaaacttctttcttgt---tagagaccacaacaacaaaccatttgcttggtagaatccacatcggt
upper sequence: Vv19s0085g01190.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G074103_T02 (Zea mays), 5'ss of exon 8
CAGAGACCATATATGGTTTTGGGAACACTTCGGCAACAATTGCTATATCCTACATGGGCAGAAGATGTAATTCCCGTGACAGATGGTGATGAACCAGATGgtatgtagttttaaatttaattttagagagaagggacagttgatggttagtttcttataaatagaagtttgaaagaagaaaaatcttttgatttataact--------------------------------------------------------------------------------
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---AGGCCGTATATGGTTCTGGGAACACTTCGTCAACAGTTGCTCTATCCTACGTGGACTGAAGAGGTTCAACACTCACCAGATAATGATGATAAAAACT-CAGgtagcccttctcgttagttgtacgatgtcgaacaaa-actacttaaatctgtttggagtgt-gttcagggggaaaaaaactaccaagtgtacgtgtgaaagtgctcgtggcagcgttttcctgaaacatgcatatgcatttatcctaaatcctttttttcctttcaaaatgaacag
upper sequence: Vv19s0085g01190.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: EFJ13542 (Selaginella moellendorffii), 5'ss of exon 8
------------CAGAGACCATATATGGTTTTGGGAACACTTCGGCAACAATTGCTATATCCTACATGGGCAGAAGATGTAATTCCCGTGACAGATGGTGATGAACCAGATGgtatgtagttttaaatttaattttagagagaagggacagttgatggttagtttcttataaatagaagtttgaaagaagaaaaatcttttgatttataact
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TTCTTCGTGCCTCAAAAGCCATACATGACTCTTGGAACACTCCGGCAACAATTGCTATATCCAACTTGGAGCACAGACGGGGAGAAAAAACACGATCAAGgt-agcgagaatttttggtcttttacacgtgaatctatcaaatgtgtgctctcatgatccag--------------------------------------------------
upper sequence: Vv19s0085g01190.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: EFJ11675 (Selaginella moellendorffii), 5'ss of exon 8
------------CAGAGACCATATATGGTTTTGGGAACACTTCGGCAACAATTGCTATATCCTACATGGGCAGAAGATGTAATTCCCGTGACAGATGGTGATGAACCAGATGgtatgtagttttaaatttaattttagagagaagggacagttgatggttagtttcttataaatagaagtttgaaagaagaaaaatcttttgatttataact
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TTCTTCGTGCCGCAAAAGCCATACATGACTCTTGGAACACTCCGGCAACAATTGCTATATCCAACTTGGAGCACAGACGAGGAGAAAAAACACGATCAAGgt-agcgagaatttttggtcttttacacgtgaatctatcacaagtgtgctctcatgatccag--------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110364349|gb|EC923945.1|EC923945EST: CCCGTGACAGATGGTGATGAACCAGATG GCACTCTTCCTTTCTTGATGGGGGTATCTACCTTGGAAAATGAGGGAGAAA
genomic: CCCGTGACAGATGGTGATGAACCAGATGgtatgtagtt ... ttttccacagGCACTCTTCCTTTCTTGATGGGGGTATCTACCTTGGAAAATGAGGGAGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGAGACCATATATGGTTTTGGGAACACTTCGGCAACAATTGCTATATCCTACATGGGCAGAAGATGTAATTCCCGTGACAGATGGTGATGAACCAGATGgtatgtagttttaaatttaattttagagagaagggacagttgatggttagtttcttataaatagaagtttgaaagaagaaaaatcttttgatttataact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agggaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa