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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATGTGAGAAGTGCCGGCTTTGGGGAAAGCTTCAGATTCTTGGTCTTGGCACTGCTTTAAAAATCCTCTTCTCTGTTGATGATCAAAACCACACACCTgtaagtctgtctatgtctctttataaggagctcagaagttatttctaagcatatggataccaactctgatcttgaaagctgctctgatatatacatatatatatatatacaaggagttcaatgagttattctcaagcttttctgttactgatctcacag

Basic information

species Vitis vinifera
transcript Vv19s0027g00090.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0027g00090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G521844_T01 (Zea mays), 5'ss of exon 8
TGGATGTGAGAAGTGCCGGCTTTGGGGAAAGCTTCAGATTCTTGGTCTTGGCACTGCTTTAAAAATCCTCTTCTCTGTTGATGATCAAAACCACACACCTgtaagtctgtctat-gtctctttataaggagctcaga--agttat-ttctaagcatatggataccaact-ctgatcttgaaagctgctctgatatatacatatatatatatatacaaggagttcaatgagttattctcaagcttttctgttactgatctcacag
       ||||||||||| || ||||||||||| ||  ||||||| ||||| |||||| | ||||| || ||||| |||||||   | | |||        | || | || | | |||  | | | |    ||||     |  || || | | |  |  ||||    ||  | || |||   ||   | || |  | |  | | | | |                                                       
------CGAGAAGTGCCGACTGTGGGGAAAGCTCCAAGTTCTTGGCCTTGGAACTGCTCTGAAAATTCTTTTCTCCGTTGATGGAGACAGCCATTTGA--ATCAGCCGgtatgtagtccatctctcaaatactcactcctgccatattatgatctaagagatatatgctgttaattttgttggca--tttgctcgaaaactgtttgtttt------------------------------------------------------

upper sequence: Vv19s0027g00090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G108115_T01 (Zea mays), 5'ss of exon 8
TGGATGTGAGAAGTGCCGGCTTTGGGGAAAGCTTCAGATTCTTGGTCTTGGCACTGCTTTAAAAATCCTCTTCTCTGTTGATGATCAAAACCACACACCTgtaagtctgtctat-gtctctttataaggagctcagaagttatttctaagcatatggataccaactctgatcttgaaagctgctctgatatatacatatatatatatatacaagga--gttcaatgagttattctcaagcttttctgttactgatctcacag
       ||||||||||| || ||||||||||| ||  ||| ||||||||| |||||  | ||||| || |||||||||||||   | | ||| |      | || | || | | |||  ||| | |    ||||  |     | |||  |||||          | |||| |||| || | |||   |   | |  | |||   ||     |||   ||||                                        
------CGAGAAGTGCCGACTGTGGGGAAAGCTCCAAGTTCATGGTCTTGGAACTGCACTGAAAATTCTTTTCTCTGTTGATGGGGACAGCCATATGA--ATCAGCCAgtatgtagtccgtttctcaaatactcatta-ccgctcctac-catat----------tatgat-ttgagagatactccc-tccgtcccaaaataatgatgctttaggtttgttc----------------------------------------