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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAGgtaatatgttgcttaattctctatttgtgggtctaaaactgaaagtggagttacatagtggaagaagtattatatgttgacgaaacataccctagatagctttttcttcagaagctagatactgataattcttatgtcagtgcataccttttgtgctttttccag

Basic information

species Vitis vinifera
transcript Vv19s0014g05210.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g05210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G17110.1 (Glycine max), 5'ss of exon 8
GTATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAGgtaatatgttgcttaattc---tctatttgtgggtctaaaactgaaagtggagttacatagtggaagaagtattatatgttgacgaaacataccctagatagctttttcttcagaagctagatactgataattcttatgtcagtgcataccttttgtgctttttccag
|||| ||  || || ||||||| ||| |||||||| ||||||||||||||||||||||||||||| || ||||| |    ||||| | |     |||| |    |||   ||| | || ||  ||||   | |||   |||  |     ||||    |     |   ||  |  ||| |                                                             
GTATACAATGCTTCAGTTCATTTAAATTATGTTGATTGTAATAGGTGGCTGGGTGATTTTATCCTCTCAAAGgtgagtgattgctcagtatccatctactaccaggtg-gaaatttaatgttaagtt-tgttgtgatggaaaaaac---tgttccttagctggaattta--tgacttct-------------------------------------------------------------

upper sequence: Vv19s0014g05210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G02690.3 (Glycine max), 5'ss of exon 7
GTATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAGgtaatatgttgcttaattctctatttgtgggtctaaaactgaaagtggagttacatagtggaagaagtattatatgttgacgaaacataccctagatagctttttcttcagaagctagatactgataattcttatgtcagtgcataccttttgtgctttttccag
|||| ||  || || ||||||| ||| ||||||||||||||||||||||| |||||||||||||| || ||||| |    ||||| | |   |          ||||  ||   |||||||  |   || ||  ||   | || |      | |||   | |||||| | |  |||  || |                                                       
GTATACAATGCTTCAGTTCATTTAAATTATGTTGACTGTAATAGGTGGCTAGGTGATTTTATCCTCTCAAAGgtgagtgattgctcagtatcc---------atctactacc--aagtggaactt--taatgttaggtttgttgtgatggaaagaactgttccctagctggaatttctttgactt----------------------------------------------------

upper sequence: Vv19s0014g05210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA12G34240.1 (Glycine max), 5'ss of exon 10
GTATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAGgtaatatgttgcttaattctctatttgtgg---gtctaaaactgaaagtggagttacatagtggaagaagtattatatgttgacgaaacataccctagatagctttttcttcagaagctagatactgataattcttatgtcagtgcataccttttgtgctttttccag
                | |||  ||| ||||||||||||||||||||| |||||||||||||||| || ||||| |  || | | | ||| ||  | |       |    ||| | || ||   |||     || | |||| || |||      | |  |    |   |   | ||                                                                
----------------TGCATATAAATTATGTTGACTGTAATAGGTGGTTGGGTGATTTTATCCTCTCAAAGgtga-gtgattcctcattatcagtctactacctggtggaaattaaatgttaggttt----gttgtagaaatactatgctccaatggtatcagcttcatgcatctc---------------------------------------------------------------

upper sequence: Vv19s0014g05210.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G36310.1 (Glycine max), 5'ss of exon 8
GTATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAGgtaatatgttgcttaattc---tctatttgtgggtctaaaactgaaagtggagttacatagtggaagaagtattatatgttgacgaaacataccctagatagctttttcttcagaagctagatactgataattcttatgtcagtgcataccttttgtgctttttccag
|| | ||  || || || |||  ||| ||||||||||||||||||||| |||||||||||||||| || ||||| |    ||||| | |     ||||||    |||  |||  | ||| |  || |   | ||||||    || |||      | |  |    |   |   | |||                                                               
GTTTACACTGCTTCAGTGCATATAAATTATGTTGACTGTAATAGGTGGTTGGGTGATTTTATCCTCTCAAAGgtgagtgattgctcagtatcagtctattacctggtggaaa--ttaaattttaggtttgttgtggaaa---tactatgctccaatggtatcagcttcatggatctt---------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351053554|gb|FQ459301.1|FQ459301
EST:     CAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAG                         AGTGTTGATAATGAAATTGTGTTATGGGAACCCAAAAACCAAGAAA-AGTC
genomic: CAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAGgtaatatgtt ... ctttttccagAGTGTTGATAATGAAATTGTGTTATGGGAACCCAAAA-CCAAGGAACAGTC
EST: gi|110378718|gb|EC943862.1|EC943862
EST:     CAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAG                         AGTGTTGATAATGAAATTGTGTTATGGGAACCCAAAACCAAGGAACAGTCT
genomic: CAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAGgtaatatgtt ... ctttttccagAGTGTTGATAATGAAATTGTGTTATGGGAACCCAAAACCAAGGAACAGTCT
EST: gi|352791431|gb|FQ481010.1|FQ481010
EST:     CAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAG                         AGTGTTGATAATGAAATTGTGTTATGGGAAACCCAAAAC-AAGGAACAGTC
genomic: CAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAGgtaatatgtt ... ctttttccagAGTGTTGATAATGAAATTGTGTTATGGGAA-CCCAAAACCAAGGAACAGTC
EST: gi|351033874|gb|FQ447912.1|FQ447912
EST:     CAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAG                         AGTGTTGATAATGAAATTGTGTTATGGGAACCCAAAACCAAGGAACAGTCT
genomic: CAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAGgtaatatgtt ... ctttttccagAGTGTTGATAATGAAATTGTGTTATGGGAACCCAAAACCAAGGAACAGTCT