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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGACAAATCCTAAAAATGCAATCAGTGAGCATTTTTTACCAAGGTTCCTAGACTTCATAGTGTGGGGGCATGAACATGAATGTCTTGTTGATCCTCAGgtggcaccaaatatttatttgtttttttctataactcatgactttacttttgctacagtatctcattggaggtcgttttgctttgaacag

Basic information

species Vitis vinifera
transcript Vv19s0014g03680.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g03680.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G106056_T01 (Zea mays), 5'ss of exon 10
---AAAGACAAATCCTAAAAATGCAATCAGTGAGCATTTTTTACCAAGGTTCCTAGACTTCATAGTGTGGGGGCATGAACATGAATGTCTTGTTGATCCTCAGgtggcaccaaatatttatttgtttttttctataactcatgactttacttttgctacagtatctcattggaggtcgttttgctttgaacag
   ||||||||| ||||||| ||| |||| ||||||||| |||||| | ||||| || || || || ||||| ||||| |||||||||||| |||||||||||||  || |     || || | |  |||| | | | | | ||||                                               
GATAAAGACAAACCCTAAAAGTGCCATCAATGAGCATTTCTTAccacgtttcctggattttattgtatggggccatgagcatgaatgtcttattgatcctcaggtaacagc-----ttgatatttccttttttgttattaaggactaa---------------------------------------------

upper sequence: Vv19s0014g03680.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G106056_T03 (Zea mays), 5'ss of exon 9
AAAGACAAATCCTAAAAATGCAATCAGTGAGCATTTTTTACCAAGGTTCCTAGACTTCATAGTGTGGGGGCATGAACATGAATGTCTTGTTGATCCTCAGgtggca-ccaaatatttatttgtttttttctataactc--atgactttactt--ttgctacagtatctcattggagg-------tcgttttgctttgaacag------------------
||||||||| ||||||| ||| |||| ||||||||| |||||| | ||||| || || || || ||||| ||||| |||||||||||| |||||||||||||  || |   ||||||  || ||| ||  ||        ||| |||| ||   ||| |    ||| |  ||   |        | ||  ||| || |   |                  
AAAGACAAACCCTAAAAGTGCCATCAATGAGCATTTCTTACCACGTTTCCTGGATTTTATTGTATGGGGCCATGAGCATGAATGTCTTATTGATCCTCAGgtaacagcttgatatttccttttttgttattaaggactaaatggctttgctgagttgttgtgatatgtttttaaggaaaaaaactggtcatgcattcatacgtatatatactatctacag

upper sequence: Vv19s0014g03680.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G12420.1 (Glycine max), 5'ss of exon 4
AAAGACAAATCCTAAAAATGCAATCAGTGAGCATTTTTTACCAAGGTTCCTAGACTTCATAGTGTGGGGGCATGAACATGAATGTCTTGTTGATCCTCAGgtggcaccaa--atatttatttgtttttttctataact--catgactttacttttgctacagtatctcattggaggtcgttttgctttgaacag
 || | |||||| |||||||| || | |||||| || || ||| | |||||||||||||| |||||||| ||||| ||||||||| | ||||| || ||||||   | ||  ||| || | |    |   ||   | |  |||   ||   || ||| | ||||     |   |  |   ||| ||        
TAAAATAAATCCAAAAAATGCGATAAATGAGCACTTCTTGCCATGCTTCCTAGACTTCATTGTGTGGGGCCATGAGCATGAATGTTTGGTTGACCCGCAGgtg-tgctaattatacttgtcttaaatgggctcagattgacatatgttgtgttctgcaaaagtaatatgt---attttaattttctccag----

upper sequence: Vv19s0014g03680.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G54260.1 (Arabidopsis thaliana), 5'ss of exon 9
AAAGACAAATCCTAAAAATGCAATCAGTGAGCATTTTTTACCAAGGTTCCTAGACTTCATAGTGTGGGGGCATGAACATGAATGTCTTGTTGATCCTCAGgtggcaccaaatatttattt------gtttttttctataactca---tga-ctttacttttgctacagtatctca-ttggaggtcgttttgctttgaacag
 ||  |||| || ||||||||||| |||||||| ||| | ||| | ||||| |||||||| |||||||| ||||| |||||||| ||  | || || |||||  ||  ||| ||||  ||      ||| ||   | ||| | |   ||| |   | | || ||    | | | |  |  | |   ||   ||||  |   
GAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCCCAGgtc-catgaaaaatttgatttttggagttattgcatttaaataagagtgagccacaatgttacttgcctctttgagctaaaagctattaaacttttgaag-