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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTGATGGGATTCTGTCTGAGGCCAGATGGCTTCTCGATAATGGTCTTCTTCCAAATTCAAATTCTGCAACTCGAGCAATTGGTTACAGACAGgtagttggatattttcctgatccattctttctgttctatatctatttattgcatatatttacaaactttaattgtctttttattttgtttaactttgttc...

Basic information

species Vitis vinifera
transcript Vv19s0014g01630.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g01630.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G34680.1 (Glycine max), 5'ss of exon 7
GAAGTGATGGGATTCTGTCTGAGGCCAGATGGCTTCTCGATAATGGTCTTCTTCCAAATTCAAATTCTGCAACTCGAGCAATTGGTTACAGACAGgtagttggatattttcctgatccattctttctgttcta-tatctatttattgcatat------atttacaaactttaattgtctttttattttgtttaactttgttc
|||| ||||||||| ||||||||||   ||||||||| ||||  ||||||| |||||| || |||||||||||   |||||||||||||||||| |||      |||  |    ||      ||||  || || |||||    ||| || ||      || ||     || ||   ||| | |||| |||  | |       
GAAGGGATGGGATTTTGTCTGAGGCTCAATGGCTTCTTGATACAGGTCTTCATCCAAACTCCAATTCTGCAACAAAAGCAATTGGTTACAGACAAgtatacctttatagtttctatattacatttcacttttactatctgcaaatttcagatgatgaaatatatctggttgaacgatctgtatattgtgtacagc-------

upper sequence: Vv19s0014g01630.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G20040.3 (Arabidopsis thaliana), 5'ss of exon 7
GAAGTGATGGGATTCTGTCTGAGGCCAGATGGCTTCTCGATAATGGTCTTCTTCCAAATTCAAATTCTGCAACTCGAGCAATTGGTTACAGACAGgtagttggatattttcctgatccattctttctgttctatatctatt---tattgcatatatttacaaacttta---attgtctttttattttgtttaactttgttc------------
             | |||| || || ||||||||||| |||  ||||||||||||||| |||||| |||||||||| || ||||| |||||||||||       |  |||||||  |     | |   |     |   |      |  || |   | |   ||  |     || |||||| || || |   |    | | |            
-------------TTTGTCAGAAGCTAGATGGCTTCTTGATCTTGGTCTTCTTCCAAACTCAAATCCTGCAACTCGTGCCATTGGGTACAGACAGGTGAACTCTTTATTTCCTgtactgggttgtgaataacgaactgagaagagaaggctttcttctgttaatctagtgcatagtctttataattagccaagggctctgcagtggattgtag

upper sequence: Vv19s0014g01630.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G20040.2 (Arabidopsis thaliana), 5'ss of exon 7
GAAGTGATGGGATTCTGTCTGAGGCCAGATGGCTTCTCGATAATGGTCTTCTTCCAAATTCAAATTCTGCAACTCGAGCAATTGGTTACAGACAGgtagttggatattttcctgatccattctttctgttctatatctattt---attgcatatatttacaaacttta---attgtctttttattttgtttaactttgttc
||    ||||  || |||| || || ||||||||||| |||  ||||||||||||||| |||||| |||||||||| || ||||| |||||||||||       |  |||||||  |     | |   |     |   |      |  || |   | |   ||  |     || |||||| || || |   |         
GACCCAATGGAGTTTTGTCAGAAGCTAGATGGCTTCTTGATCTTGGTCTTCTTCCAAACTCAAATCCTGCAACTCGTGCCATTGGGTACAGACAGgtgaactctttatttcctgtactgggttgtgaataacgaactgagaagagaaggctttcttctgttaatctagtgcatagtctttataattagccaaggg------