1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGAATGGCGTGCTCTTATGGACGAAATGGCTGTTGTTGCTACGGAGAATTATCGTTCAATTGTTTTCCAAGAACCTCGATTTGTTGAGTATTTCCGCCTTgtaagtatcctgcaatatctttgactctatttaaaccaagtaaaggctgttaccattttaatgatcgtcttgtgctatgattgtag
species | Vitis vinifera |
transcript | Vv19s0014g01390.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATCGTTCAGTTGTTTTCCAAGAACCTCGATTTGTTGAGTATTTCCGCCTT GCTACACCAGAGCTGGAGTATGGTAGAATGAACATTGGTAGCCGTCCATCAEST: gi|27585946|gb|CB008641.1|CB008641
genomic: ATCGTTCAATTGTTTTCCAAGAACCTCGATTTGTTGAGTATTTCCGCCTTgtaagtatcc ... atgattgtagGCTACACCAGAGCTGGAGTATGGTAGAATGAACATTGGTAGCCGTCCATCA
EST: ATCGTTCAATTGTTTTCCAAGAACCTCGATTTGTTGAGTATTTCCGCCTT GCTACACCAGAGCTGGAGTATGGTAGAATGAACATTGGTAGCCGTCCATCAEST: gi|110718456|gb|EE095313.1|EE095313
genomic: ATCGTTCAATTGTTTTCCAAGAACCTCGATTTGTTGAGTATTTCCGCCTTgtaagtatcc ... atgattgtagGCTACACCAGAGCTGGAGTATGGTAGAATGAACATTGGTAGCCGTCCATCA
EST: ATCGTTCAATTGTTTTCCAAGAACCTCGATTTGTTGAGTATTTCCGCCTT GCTACACCAGAGCTGGAGTATGGTAGAATGAACATTGGTAGCCGTCCATCAEST: gi|110361120|gb|EC924573.1|EC924573
genomic: ATCGTTCAATTGTTTTCCAAGAACCTCGATTTGTTGAGTATTTCCGCCTTgtaagtatcc ... atgattgtagGCTACACCAGAGCTGGAGTATGGTAGAATGAACATTGGTAGCCGTCCATCA
EST: TGAGTATTTCCGCCTT GCTACACCAGAGCTGGAGTATGGTAGAATGAACATTGGTAGCCGTCCATCAEST: gi|27584127|gb|CB006822.1|CB006822
genomic: TGAGTATTTCCGCCTTgtaagtatcc ... atgattgtagGCTACACCAGAGCTGGAGTATGGTAGAATGAACATTGGTAGCCGTCCATCA
EST: ATCGTTCAATTGTTTTCCAAGAACCTCGATTTGTTGAGTATTTCCGCCTT GCTACACCAGAGCTGGAGTATGGTAGAATGAACATTGGTAGCCGTCCATCAEST: gi|34544610|gb|CF512842.1|CF512842
genomic: ATCGTTCAATTGTTTTCCAAGAACCTCGATTTGTTGAGTATTTCCGCCTTgtaagtatcc ... atgattgtagGCTACACCAGAGCTGGAGTATGGTAGAATGAACATTGGTAGCCGTCCATCA
EST: ATCGTTCAATTGTTTTCCAAGAACCTCGATTTGTTGAGTATTTCCGCCTT GCTACACCAGAGCTGGAGTATGGTAGAATGAACATTGGTAGCCGTCCATCAEST: gi|156735834|gb|EV239955.1|EV239955
genomic: ATCGTTCAATTGTTTTCCAAGAACCTCGATTTGTTGAGTATTTCCGCCTTgtaagtatcc ... atgattgtagGCTACACCAGAGCTGGAGTATGGTAGAATGAACATTGGTAGCCGTCCATCA
EST: ATCGTTCAGTTGTTTTCCAAGAACCTCGATTTGTTGAGTATTTCCGCCTT GCTACACCAGAGCTGGAGTATGGTAGAATGAACATTGGTAGCCGTCCATCAEST: gi|71884541|gb|DT033596.1|DT033596
genomic: ATCGTTCAATTGTTTTCCAAGAACCTCGATTTGTTGAGTATTTCCGCCTTgtaagtatcc ... atgattgtagGCTACACCAGAGCTGGAGTATGGTAGAATGAACATTGGTAGCCGTCCATCA
EST: ATCGTTCAATTGTTTTCCAAGAACCTCGATTTGTTGAGTATTTCCGCCTT GCTACACCAGAGCTGGAGTATGGTAGAATGAACATTGGTAGCCGTCCATCAEST: gi|33409891|gb|CF215518.1|CF215518
genomic: ATCGTTCAATTGTTTTCCAAGAACCTCGATTTGTTGAGTATTTCCGCCTTgtaagtatcc ... atgattgtagGCTACACCAGAGCTGGAGTATGGTAGAATGAACATTGGTAGCCGTCCATCA
EST: ATCGTTCAATTGTTTTCCAGGAACCTCGATTTGTTGAGTATTTCCGCCTT GCTACACCAGAGCTGGAGTATGGTAGAATGAACATTGGTAGCCGTCCATCA
genomic: ATCGTTCAATTGTTTTCCAAGAACCTCGATTTGTTGAGTATTTCCGCCTTgtaagtatcc ... atgattgtagGCTACACCAGAGCTGGAGTATGGTAGAATGAACATTGGTAGCCGTCCATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATGGCGTGCTCTTATGGACGAAATGGCTGTTGTTGCTACGGAGAATTATCGTTCAATTGTTTTCCAAGAACCTCGATTTGTTGAGTATTTCCGCCTTgtaagtatcctgcaatatctttgactctatttaaaccaagtaaaggctgttaccattttaatgatcgtcttgtgctatgattgtag
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