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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAATGTACCTTAGTGCATTTAGCAGCTGCTATGGAGCTTGGACATTCAAATGAACTCTATCTTATGGCATGCAATTTAGTGAAAGATTATCCTCAAAAgtgagaatgctttctttcattatgttccttcttttttcaatgtatttagattttgtttttctgagtttaatttgcacttcagatagtaaccacagttata...

Basic information

species Vitis vinifera
transcript Vv19s0014g01170.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g01170.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os03g13370.1 (Oryza sativa), 5'ss of exon 9
TGAAATGTACCTTAGTGCATTTAGCAGCTGCTATGGAGCTTGGACATTCAAATGAACTCTATCTTATGGCATGCAATTTAGTGAAAGATTATCCTCAAAAgtgagaatgctttctttcattatgttccttcttttttcaatgtatttagattttgtttttctgagtttaatttgcacttcagatagtaaccacagttata-
||||||| || ||||| ||||| |||||||| ||||||||||| ||||||||||| || ||| || |||| |||||| ||||||| || |||||||| ||||||| || |   ||  | |        |        ||   |||||    |     |   || | ||  |   |  ||||  |       ||| |  || 
TGAAATGCACGTTAGTTCATTTGGCAGCTGCAATGGAGCTTGGCCATTCAAATGACCTTTATATTTTGGCCTGCAATCTAGTGAAGGACTATCCTCAGAAgtgagtattcccactggcctgcccacattcagacccacataatatttgttatcctgctagatgggcttt-tccccctttcatttgcatgtaacaatcttag

upper sequence: Vv19s0014g01170.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G166684_T02 (Zea mays), 5'ss of exon 8
TGAAATGTACCTTAGTGCATTTAGCAGCTGCTATGGAGCTTGGACATTCAAATGAACTCTATCTTATGGCATGCAATTTAGTGAAAGATTATCCTCAAAAgtgagaatgc-tttctttcattatgttccttcttttttcaatgtatttagattttgtttttctgagtttaat-ttgcacttcagatagtaaccacagttata
| || || || ||||| ||||| ||| |||| ||||||||||| ||||  ||||| || |||||| |||||||||| |||||||| ||||||||||||||||||| |||  | |   |||||   |   | |||  |||| | | ||       |  | |  |  | | | | ||     | |  |    || | ||||   
TAAAGTGCACATTAGTTCATTTGGCAACTGCAATGGAGCTTGGTCATTGCAATGATCTTTATCTTTTGGCATGCAACTTAGTGAAGGATTATCCTCAAAAgtgagtatggatcttaatcattggttgattacttaattcattattttatctccattatctaatatgatcagtattctgacttaattttcgacaaaagttg--

upper sequence: Vv19s0014g01170.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G147603_T02 (Zea mays), 5'ss of exon 8
TGAAATGTACCTTAGTGCATTTAGCAGCTGCTATGGAGCTTGGACATTCAAATGAACTCTATCTTATGGCATGCAATTTAGTGAAAGATTATCCTCAAAAgtgagaatgc-tttctttcattatgttccttcttttttcaatgtatttagattttgtttttctgagtttaat-ttgcacttcagatagtaaccacagttata
| || || || ||||| ||||| ||| |||| ||||||||||| ||||| ||||| || |||||| | |||||||| |||||||| ||||||||| ||||||||| |||  | |   |||||   |   |  || ||||    | || |     || |    |  | | | | |      | |  |   ||| | ||||   
TAAAGTGCACATTAGTTCATTTGGCAACTGCAATGGAGCTTGGTCATTCCAATGATCTTTATCTTTTAGCATGCAACTTAGTGAAGGATTATCCTGAAAAgtgagtatggatcttaatcattggttgattaattatttcgtgattttcattccatgatacaatatgatcattatcctgacttaattttcaacaaaagttg--

upper sequence: Vv19s0014g01170.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA06G32850.1 (Glycine max), 5'ss of exon 8
TGAAATGTACCTTAGTGCATTTAGCAGCTGCTATGGAGCTTGGACATTCAAATGAACTCTATCTTATGGCATGCAATTTAGTGAAAGATTATCCTCAAAAgtgagaatgctttctttcattatgttccttcttttttcaatgtatttagatttt---gtttttctgagtttaa-tttgcacttcagata-gtaaccacagttata-----------------------------------------------
| ||   |||  |||| ||| | ||||||||| |||||||||| |||||||||||||||||||| ||| |||||||||| ||||| ||||||||||| | || |  |   ||||  | ||| | |    |||| |    || |    | || |     ||  ||| | |||||  ||   ||| | ||| |||          ||                                               
TAAAGACTACGCTAGTACATCTGGCAGCTGCTGTGGAGCTTGGGCATTCAAATGAACTCTATCTGATGTCATGCAATTTGGTGAAGGATTATCCTCAGATgtaaacactttttccatgatt-tctattgtcttctaatgattttgccacatataagaattactcttaatttaaacttttgcttgatatatgtagttgtctccttaagccttttgttatgtaaaacaattaaatctcattgatgttggtgtag

upper sequence: Vv19s0014g01170.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA12G25700.1 (Glycine max), 5'ss of exon 8
TGAAATGTACCTTAGTGCATTTAGCAGCTGCTATGGAGCTTGGACATTCAAATGAACTCTATCTTATGGCATGCAATTTAGTGAAAGATTATCCTCAAAAgtgagaatgctttctttcattatgtt--ccttct-----tttttcaatgtatttagattttgtttttctgag---tttaatttgcacttcagatagt-------aaccacagttata---------------------------------
| ||   ||| ||||| ||| | ||||||||| |||||||||| |||||||||||||||||||| ||| |||||||||| ||||| ||||||||||| | || |  |   |||   | ||| || |   |||||     |||| | |  |||    |||    |||  | ||   |||  ||   |  |    | ||       | ||  ||||||                                  
TAAAGACTACGTTAGTACATCTGGCAGCTGCTGTGGAGCTTGGGCATTCAAATGAACTCTATCTGATGTCATGCAATTTGGTGAAGGATTATCCTCAGATgtaaacacttttttcatgattttgattgtcttctaatgattttgccacatataagaattactctttatttagacttttgcttaatatatttagttgtctccttaagccttagttatgtaaaacaatgaaatctcattgatgttggtttag