Sequence
atgc intronic sequence ATGC exonic sequenceCCTGCACAGATTGCTGGGTGTAAGACTGTTGTCCTTGCAACTCCCCCTAGTCAAGATGGCGGCATCTGCAAGgtattcttttagtgcctaggatgagacatctatctcattatgaaatcaattattattattatttgattaatgttctcctgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0166g00300.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g13190.1 (Oryza sativa), 5'ss of exon 6
CCTGCACAGATTGCTGGGTGTAAGACTGTTGTCCTTGCAACTCCCCCTAGTCAAGATGGCGGCATCTGCAAGgtattcttttagtgcctaggatgagacatctatctcattatgaaatcaat-------tattattattatttgattaatgttctcctgtag-------------------
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CCTGCACAGATTGCTGGTTGCAAAACTGTTGTTCTTGCCACACCCCCTAGTCGTGATGGTAGCATATGTAAGgtacaattttattggatgcaggattgctgctatttc--tgagaagttgatatgtttgtgtttctaatgttgaattatttggaatcggttgttgctcttgtcctccgcag
upper sequence: Vv18s0166g00300.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G08630.1 (Glycine max), 5'ss of exon 5
CCTGCACAGATTGCTGGGTGTAAGACTGTTGTCCTTGCAACTCCCCCTAGTCAAGATGGCGGCATCTGCAAGgtattcttttagtgcctaggatgagacatctatctcattatgaaatcaattattattattatttgattaatgttctcctgtag
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CCTGCACAGATTGCTGGATGTAAAACTATTGTCCTTGCAACTCCTCCAGCTCAGGATGGTACTATATGCAAGgtactcatcta---tattgtatgaaa-atatttgagaccatagcatcttttctgaccaacgttt---------tttgctgcag
upper sequence: Vv18s0166g00300.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S15_472V6.1 (Physcomitrella patens), 5'ss of exon 7
CCTGCACAGATTGCTGGGTGTAAGACTGTTGTCCTTGCAACTCCCCCTAGTCAAGATGGCGGCATCTGCAAGgtattcttttagtgccta-ggatgagacatctatctcattatgaaatcaattattattattatttgattaatgttctcctgtag---------------------------------------------------------------
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CCTGCACAGATCGCTGGGTGTAAGACCGTGGTCGTTGCAACTCCTCCAAGGAAAGACGGCTCTATTTGTCCCgtaagtttgacatccttgcaggcatgataatctgcgttctttcggtttagagatgctgtgcagggatcttatctttctcggtgggcactttcagttcgtaggacagaaaataatcattgatctaacgaggatagcatctgctggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351043930|gb|FQ431361.1|FQ431361EST: AGACTGTTGTCCTTGCAACTCCCCCTAGTCAAGATGGCGGCATCTGCAAG GAGGTACTCTATTGT
genomic: AGACTGTTGTCCTTGCAACTCCCCCTAGTCAAGATGGCGGCATCTGCAAGgtattctttt ... tctcctgtagGAGGTACTCTATTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTGCACAGATTGCTGGGTGTAAGACTGTTGTCCTTGCAACTCCCCCTAGTCAAGATGGCGGCATCTGCAAGgtattcttttagtgcctaggatgagacatctatctcattatgaaatcaattattattattatttgattaatgttctcctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG