Sequence
atgc intronic sequence ATGC exonic sequenceGGTGTGGCTGCTGGTGCTGCTTTACTATTTGCTGCTCCTGCAATTGGTTTTGCATGGTGGCGCCGAAGGAAACCACAAGAATATTTCTTTGATGTACCTGgttagtggtttaactgaaaaagattattaaccttgcgtatggatagattatcatttgtttacgtctctttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os08g07760.1 (Oryza sativa), 5'ss of exon 8
GGTGTGGCTGCTGGTGCTGCTTTACTATTTGCTGCTCCTGCAATTGGTTTTGCATGGTGGCGCCGAAGGAAACCACAAGAATATTTCTTTGATGTACCTGgttagtggtttaactgaaaaag--attattaaccttgcgtatggatagattatcattt--gtttacgtctctttgcag
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GGAGTGGCTGCTGGAGCAGCCTTGCTATTTGCTATTCCTGCTATTGGTTTTGCATGGTATCGGCGCAGGAAACCCCAAGAGCATTTCTTTGATGTGCCTGgtaagcg-tccaatagaacaagcgaacttggagaataatattgagccaactttgattgagattcattatttgttacag
upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os04g38480.1 (Oryza sativa), 5'ss of exon 8
GGTGTGGCTGCTGGTGCTGCTTTACTATTTGCTGCTCCTGCAATTGGTTTTGCATGGTGGCGCCGAAGGAAACCACAAGAATATTTCTTTGATGTACCTGgttagtggtttaactgaaaaagattattaaccttgcgtatgg-atagattatcatttgtttacgtctctttgcag------
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GGTGTTGCTGCAGCTGCTGCATTGCTGTTTGCGGTTCCGGCAATTGGATTTGCATGGTGGCGGCGGCGTAAACCTGAAGAACACTTCTTTGATGTCCCTGgttggtattatagttgcatactgcagttcatgatacttatgttatccatt-taaataatctatattctcctttaaattcag
upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G384439_T01 (Zea mays), 5'ss of exon 8
GGTGTGGCTGCTGGTGCTGCTTTACTATTTGCTGCTCCTGCAATTGGTTTTGCATGGTGGCGCCGAAGGAAACCACAAGAATATTTCTTTGATGTACCTGgttagtggtttaactgaaaaagatt-----attaaccttgcgtatggat-agattatcatttgtttacgtctctttgcag
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GGAGTGGCTGCTGGTGCAGCCTTGCTATTTGCTATTCCTGCAATTAGTTTTGCCTATTGGCGGCGCAGGAAACCACAAGAACATTTCTTTGATGTACCTGgtaagtattcaacaggagaataacttagggaacaacattgaatttgaattaacttaatgtgagacttcgaatgtg-gcag
upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G31320.1 (Glycine max), 5'ss of exon 8
GGTGTGGCTGCTGGTGCTGCTTTACTATTTGCTGCTCCTGCAATTGGTTTTGCATGGTGGCGCCGAAGGAAACCACAAGAATATTTCTTTGATGTACCTGgttagtggtt-taactgaa-------aaagattattaaccttgcgtatgga---tagattatcatttgtttacgtctctttgcag
|| || ||||||||||||||| || |||||||||| |||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||||| |||||| || | || ||| || || ||| | || || || || | | | |||| || | | | |||||||
GGAGTTGCTGCTGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCCTGGTGGCGTCGAAGGAAACCACAAGAATTTTTCTTTGATGTGCCTGgtgagcaatcatagaagaatgggtataacagtttctaaacctgtttaaagaatatatagtttgatttccttgcttatgtttgcag
upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G36280.1 (Glycine max), 5'ss of exon 8
GGTGTGGCTGCTGGTGCTGCTTTACTATTTGCTGCTCCTGCAATTGGTTTTGCATGGTGGCGCCGAAGGAAACCACAAGAATATTTCTTTGATGTACCTGgttagtggtttaactgaa--------aaagattattaaccttgcgtatgga---tagattatcatttgtttacgtctctttgcag
||||| || |||||||||||| || |||||||||| |||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||||| |||||| || | || | || || || | ||| || || || | | | |||| || | | |||||||
GGTGTTGCCGCTGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCCTGGTGGCGTCGAAGGAAACCACAAGAATTTTTCTTTGATGTGCCTGgtgagcaatcaaagaagaatgggtataacagtttttgaacttatttaaagaatatataatttgatttccttgaatatgtttgcag
upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G08360.1 (Glycine max), 5'ss of exon 6
GGTGTGGCTGCTGGTGCTGCTTTACTATTTGCTGCTCCTGCAATTGGTTTTGCATGGTGGCGCCGAAGGAAACCACAAGAATATTTCTTTGATGTACCTGgttagtggt---------ttaactgaaaaagattattaaccttgcgtatggatagattatcatttg-tttacgtctctttgcag
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GGAGTAGCTGCAGGTGCTGCTCTGTTATTTGCTGCTCCTGCAATTGTGTTTGCTTGGTGGCGTCGAAGGAAACCACAGGAGTTTTTCTTTGATGTGCCCGgtgagctatcccatcctattcaattgaatactgtattggttgaataaattaattggatggaatttgacttacatctaattacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37187909|gb|CF607260.1|CF607260EST: TGCATGGTGGCGCCGAAGGAAACCACAAGAATATTTCTTTGATGTACCTG CTGAAGAGGACCCAGAGGTTCATCTGGGGCAGCTTAAAAGGTTTTCACTGC
genomic: TGCATGGTGGCGCCGAAGGAAACCACAAGAATATTTCTTTGATGTACCTGgttagtggtt ... ctctttgcagCTGAAGAGGACCCAGAGGTTCATCTGGGGCAGCTTAAAAGGTTTTCACTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGTGGCTGCTGGTGCTGCTTTACTATTTGCTGCTCCTGCAATTGGTTTTGCATGGTGGCGCCGAAGGAAACCACAAGAATATTTCTTTGATGTACCTGgttagtggtttaactgaaaaagattattaaccttgcgtatggatagattatcatttgtttacgtctctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA