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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGTGAATGTTCCTGAGAAGGGAGCGAGGAAGCATCCTCGGGGTGATAATATTCAGgtatgtcagttctgaatatgtcttcttgtgctcctttggatttattatcttatttacaagtttttagtgtgatttataatcattttattgatattaatgt...

Basic information

species Vitis vinifera
transcript Vv18s0089g01240.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0089g01240.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os02g35630.1 (Oryza sativa), 5'ss of exon 8
ATAGTGAATGTTCCTGAGAAGGGAGCGAGGAAGCATCCTCGGGGTGATAATATTCAGgtatgtcagttctgaatatgtcttcttgtgctcctttggatttattatcttatttacaa-gtttttagtgtgatttataatcattttattgatattaatgt
|| || ||||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||         |  |||| |     | | |     |  | |  ||| | | |||     |   | | |      ||| ||  || | ||    | |||| 
ATTGTCAATGTCCCTGAGAAAGGAGCAAGGAAGCATCCTCGCGGTGATAATATACAGgtactgtcacagtttatatattacaatcttcaaaaataaaatatttagcctttttgtgccggaataattacaccatatcatttttatcttctgctgaatg-

upper sequence: Vv18s0089g01240.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G050186_T05 (Zea mays), 5'ss of exon 8
ATAGTGAATGTTCCTGAGAAGGGAGCGAGGAAGCATCCTCGGGGTGATAATATTCAGgta----tgtcagttctgaatatgtcttcttgtgctcctttggatttattatcttatttacaagtttttagtgtgatttataatcattttattgatattaatgt
||||| || ||||||||||| ||||| |||||||||||||| ||||||||||| ||||||    |  ||    |   ||||  || |  |  |  | |  |||| || ||      | || | || |  |       | ||||    || ||| ||  || 
ATAGTCAACGTTCCTGAGAAAGGAGCAAGGAAGCATCCTCGTGGTGATAATATACAGgtaaagtttgcaagcttatttatgaattatgattttgttctacatttcttctcca--caagaaatattaaaaggacaaagtgatcaaaa-atagattttg-tgc

upper sequence: Vv18s0089g01240.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G101791_T02 (Zea mays), 5'ss of exon 8
ATAGTGAATGTTCCTGAGAAGGGAGCGAGGAAGCATCCTCGGGGTGATAATATTCAGgtatgtcagttctgaatatgtcttcttgtgctcct-ttggatttattatcttatttacaagtttttagtgtgatttataatcattttattgatattaatgt-
||||| || |||||||| || ||||| |||||||||||||| ||||||||||| ||||||   |     |   |||| | |  |    | ||  |  |      ||  ||     ||    | |     | |    ||  |    ||| | |   ||  
ATAGTCAACGTTCCTGAAAAAGGAGCAAGGAAGCATCCTCGTGGTGATAATATACAGgtaaagctagcttatttatgacgttctacatttctactccacaagaaatggtaaaaggaaaaagtgaccaaaaatag--attgtccagttgttttctctgcc

upper sequence: Vv18s0089g01240.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA16G33080.1 (Glycine max), 5'ss of exon 9
ATAGTGAATGTTCCTGAGAAGGGAGCGAGGAAGCATCCTCGGGGTGATAATATTCAGgtatgtcagttctgaata-tgtcttcttgt-gctcctttggatttattatcttatttacaagtttttagtgtgatttataatcattttattgatattaatgt--
||||| |||||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||||   ||  ||| | |  | | | ||   ||||||  ||||  |   ||||           |      |||| |  |||| || ||| | |   | |  
ATAGTAAATGTTCCTGAGAAAGGAGCTAGGAAGCATCCACGGGGGGATAACATTCAGgtatgttgttttggaagaataacatgtcgtcattccttttcattttgt---ttatgcgtgtaccactcagacaatttttc-tcatatttttgttttcttttttt

upper sequence: Vv18s0089g01240.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G32040.1 (Glycine max), 5'ss of exon 5
ATAGTGAATGTTCCTGAGAAGGGAGCGAGGAAGCATCCTCGGGGTGATAATATTCAGgtatgtcagttctgaatatgtcttcttgtgctcctttggatttattatct-tatttacaagtt-tttagtgtgatttataatcattttattgatattaatgt
||||| |||||||||||||| |||||| |||||||||| ||||||||||| ||  ||||||||   ||| |||  ||     || || | |||  | ||| || |   || ||  |  |  | | || || |||  ||  | ||| ||           
ATAGTAAATGTTCCTGAGAAAGGAGCGTGGAAGCATCCACGGGgtgataacatataggtatgttgtttcagaaagtgcaacatt-tgttactt--gttttcttgttagtacttggatatgatatggtatgtttttcaa--aatttctt-----------

upper sequence: Vv18s0089g01240.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G28260.1 (Glycine max), 5'ss of exon 9
ATAGTGAATGTTCCTGAGAAGGGAGCGAGGAAGCATCCTCGGGGTGATAATATTCAGgtatgtcagttctgaata-tgtcttcttgt-gctcctttggatttattatcttatttacaagtttttagtgtgatttataatcattttattgatattaatgt
||||| |||||||||||||| ||||| |||||| |||| ||||| ||||| ||||||||||||   ||  ||| | |  | ||| |    ||||||  ||||  | || ||| |  |    |      |  ||| | ||||| || ||| | |  ||  
ATAGTAAATGTTCCTGAGAAAGGAGCTAGGAAGAATCCACGGGGGGATAACATTCAGgtatgttgttttggaagaataacatctcgccattccttttcattttgt-tcatatgtgtaccagtcagacattttttctcatcatgtttttgttttctatt-

upper sequence: Vv18s0089g01240.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G35600.1 (Glycine max), 5'ss of exon 8
ATAGTGAATGTTCCTGAGAAGGGAGCGAGGAAGCATCCTCGGGGTGATAATATTCAGgtatgtcagttctgaatatgt----cttcttgtgctcctttggatttattatcttatttacaagtttttagtgtgattt-ataatcattttattgatattaatgt
|| || || ||||||||||  ||||| ||||||||||| ||||||||||| || |||||||||   ||  |||  ||      || |        ||    ||| |  |   || |   |   | |  | || ||| | |||   ||   || |||      
ATGGTAAACGTTCCTGAGAGAGGAGCAAGGAAGCATCCACGGGGTGATAACATACAGgtatgttgttttggaaagtgcaatatttgtcacttgttttcttgtttgtagttggatatgatatgatatgatatggttttaaaatttcttgtctggtatg-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26257016|gb|CA808079.1|CA808079
EST:     ATGTTCCTGAGAAGGGAGCGAGGAAGCATCCTCGGGGTGATAATATTCAG                         ATAGATACAAAAGATATCCTTTTTATATGTGGTGGAGCATTTGTTGATTTA
genomic: ATGTTCCTGAGAAGGGAGCGAGGAAGCATCCTCGGGGTGATAATATTCAGgtatgtcagt ... tgaattgcagATAGATACAAAAGATATCCTTTTTATATGTGGTGGAGCATTTGTTGATTTA
EST: gi|71862340|gb|DT011395.1|DT011395
EST:     ATGTTCCTGAGAAGGGAGCGAGGAAGCATCCTCGGGGTGATAATATTCAG                         ATAGATACAAAAGATATCCTTTTTATATGTGGTGGAGCATTTGTTGATTTA
genomic: ATGTTCCTGAGAAGGGAGCGAGGAAGCATCCTCGGGGTGATAATATTCAGgtatgtcagt ... tgaattgcagATAGATACAAAAGATATCCTTTTTATATGTGGTGGAGCATTTGTTGATTTA
EST: gi|110698280|gb|EE075629.1|EE075629
EST:     ATGTTCCTGAGAAGGGAGCGAGGAAGCATCCTCGGGGTGATAATATTCAG                         ATAGATACAAAAGATATCCTTTTTATATGTGGTGGAGCATTTGTTGATTTA
genomic: ATGTTCCTGAGAAGGGAGCGAGGAAGCATCCTCGGGGTGATAATATTCAGgtatgtcagt ... tgaattgcagATAGATACAAAAGATATCCTTTTTATATGTGGTGGAGCATTTGTTGATTTA