Sequence
atgc intronic sequence ATGC exonic sequenceTGAACAAATGGTCCATAGTTCTGAAGGCACTAGGGCTATAGCTTTGGAACTTTGCCGTGAATTTGAGGATAAGTTCCTCCTGCACATTGCAGGGGGTGAGgtgagtcaattttttaatgtgtgcacattctcttgcaaatactaatatttttatatgcaaaactagggaagaatatacctccttactgccaaaaatgctc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os06g13820.2 (Oryza sativa), 5'ss of exon 8
TGAACAAATGGTCCATAGTTCTGAAGGCACTAGGGCTATAGCTTTGGAACTTTGCCGTGAATTTGAGGATAAGTTCCTCCTGCACATTGCAGGGGGTGAGgtgagtcaattttttaatgtgtgcacattctcttgcaaatactaatatttttatatgcaaaacta-gggaagaatatacctccttactgccaaaaatgctc
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AGAATCTATGGTACAAAGTGCTGAAGGGACTCGGGCTGTTGCTTTGGAACTCTGCCGGGAATTCGAGGATAAGTTTCTTGCTCATATTACATCTGGCGAGgttagtaaagagcttcaaacctacttagattttaatcataccttcctaaactgcacaagcaattacaataacaatatactgtcttg-tataaatag-----
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G00430.1 (Glycine max), 5'ss of exon 8
TGAACAAATGGTCCATAGTTCTGAAGGCACTAGGGCTATAGCTTTGGAACTTTGCCGTGAATTTGAGGATAAGTTCCTCCTGCACATTGCAGGGGGTGAGgtgagtcaattttttaatgtgtgcacattctcttgcaaatactaatatttttatatgcaaaactagggaagaatatacctccttactgccaaaaatgctc----
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TGAGTCAATGGTCACCACTTCAGAGGGTACACGTGCTATAGCCTTGGAACTTTGCCGTGAATTTGAGGATAAGTTCCTACAGCACATTACCACTGGCGAGgt---ttgctgtctcaaatcttatat-tttaattaaaattagatttatttttatgtcagttattattgggaatgttatttctttagccccaattaatctatagc
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA12G37100.1 (Glycine max), 5'ss of exon 8
TGAACAAATGGTCCATAGTTCTGAAGGCACTAGGGCTATAGCTTTGGAACTTTGCCGTGAATTTGAGGATAAGTTCCTCCTGCACATTGCAGGGGGTGAGgtgagtcaattttttaatgtgtgcacattctcttgcaaatactaatatttttatatgcaaaactagggaagaatatacctccttactgccaaaaatgctc-----
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TGAGTCTATGGTCACCACTTCAGAGGGTACGCGTGCTATAGCCTTGGAACTTTGCCGTGAATTTGAGGATAAGTTTCTACAGCACATTACCACTGGCGAGgt---ttgctgtctcaaatcttatattttagttaaattagatttat-tttttatgttagttattattgg-gaacgttattcttcagccccaattaatctttagct
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G10290.1 (Arabidopsis thaliana), 5'ss of exon 8
TGAACAAATGGTCCATAGTTCTGAAGGCACTAGGGCTATAGCTTTGGAACTTTGCCGTGAATTTGAGGATAAGTTCCTCCTGCACATTGCAGGGGGTGAGgtgagtcaattttttaatgtgtgcac---attctcttgcaaatactaatatttttatatgcaaaactagggaagaatatacctccttactgccaaaaatgctc--
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TGAACAACTAGTTAACAGTGCTGAAGGTACAAGGGCTATAGCTTTGGAGCTTTGCCGTGAGTTTGAAGACAAGTTTCTTCTGCACTTGGCTGGTGGTGAAgtaagtacattcttacaaaagttaactagatttagtcgaaaattcaagaat----ata-gtgagagagaagaactcttcaaatattagcaatcagccatttcaga
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G59610.1 (Arabidopsis thaliana), 5'ss of exon 8
TGAACAAATGGTCCATAGTTCTGAAGGCACTAGGGCTATAGCTTTGGAACTTTGCCGTGAATTTGAGGATAAGTTCCTCCTGCACATTGCAGGGGGTGAGgtgagtcaattttttaatgtgtgcacattctcttgcaaatactaatatttttatatgcaaaactagggaagaata-tacctccttactgccaaaaatgctc-
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TGAGCAATTGGTTAGCAGTGCTGAAGGCACAAGGGCAATAGCTTTGGAGCTTTGTCGTGAGTTTGAAGACAAATTTCTTCTCCATTTAGCTGGTGGTGAAgtgagt-aatttccta-cgttagctgaaccatactttagccttttcatttttctagttgttatggaaaatgtgtggtactgtttaaatatagacaattaagaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717164|gb|FC065927.1|FC065927EST: TTTGCCGTGAATTTGAGGATAAGTTCCTCCTGCACATTGCAGGGGGTGAG GGTGCTGGTTGGAAGGTCGTTGCCAGTTTTGAGGGGAATTTTCCTAACAGG
genomic: TTTGCCGTGAATTTGAGGATAAGTTCCTCCTGCACATTGCAGGGGGTGAGgtgagtcaat ... tacgtggcagGGTGCTGGTTGGAAGGTCGTTGCCAGTTTTGAGGGGAATTTTCCTAACAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAACAAATGGTCCATAGTTCTGAAGGCACTAGGGCTATAGCTTTGGAACTTTGCCGTGAATTTGAGGATAAGTTCCTCCTGCACATTGCAGGGGGTGAGgtgagtcaattttttaatgtgtgcacattctcttgcaaatactaatatttttatatgcaaaactagggaagaatatacctccttactgccaaaaatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaatg