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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTTCCACCTCTTTGTGCAGAACTTCGAAATTTGGTGATGCAACCAATGATTCTTCCCATGGTTCTCACAATAGCGGAGTCTCAGgtattaattttgcttgcatgtgataatggataagttgtctttgacctttcttgagcatgattgcactgctgtcctatgtagataaccattgatgtcttaaaatatattgtag

Basic information

species Vitis vinifera
transcript Vv18s0089g00030.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g42950.2 (Oryza sativa), 5'ss of exon 8
GTGCTTCCACCTCTTTGTGCAGAACTTCGAAATTTGGTGATGCAACCAATGATTCTTCCCATGGTTCTCACAATAGCGGAGTCTCAGgtattaattttgcttgcatgtgataatggataagttgtctttgacctttcttgagcatgattgcactgctgtcctatgtagataaccattgatgtcttaaaatatattgtag
|| ||||||||||| ||||| ||  | || ||  |||| ||||| ||||||||| | ||||||||||| ||||||||||| ||||||||    || || ||||  | | |  |   |||  || |  || |   || ||  | || ||     |  ||| | |||    |||  | | || ||    | | | |     
GTTCTTCCACCTCTCTGTGCTGAGTTACGCAACATGGTCATGCAGCCAATGATTTTGCCCATGGTTCTAACAATAGCGGAATCTCAGgtc---atgttccttgtgttttacga---atacctttttcttaaatatt-ttatgaattatattctt--tgttcaatgatagtaagaacttatctcactgattgt-taac--

upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G00470.1 (Glycine max), 5'ss of exon 8
GTGCTTCCACCTCTTTGTGCAGAACTTCGAAATTTGGTGATGCAACCAATGATTCTTCCCATGGTTCTCACAATAGCGGAGTCTCAGgtattaattttgcttgcatgtgataatggataagttgtctttgacctttcttgagcatgattgcactgctgtcctatgtagataaccattgatgtcttaaaatatattgtag
|| |||||||| ||||||||||| ||| | ||| ||||||| || ||||||||||| || |||||||| || || || |||||||||||| |||| |  ||| | | |  | |     |  |  |   | |  |       |  |  |  ||    |||      | || || || |  ||    || | |||      
GTCCTTCCACCACTTTGTGCAGAGCTTAGGAATGTGGTGATACAGCCAATGATTCTACCAATGGTTCTAACCATTGCCGAGTCTCAGgtactaatatatctttcttttcctcacttccatataatacctaaattagtgctggtgttgt--cagcattgta----attgaaaatcaatcttgcaccaagaaata------

upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 8
GTGCTTCCACCTCTTTGTGCAGAACTTCGAAATTTGGTGATGCAACCAATGATTCTTCCCATGGTTCTCACAATAGCGGAGTCTCAGgtattaattttgcttgcatgtgataa--tggataagttgtctttgacctttcttgagcatgattgcactgctgtcctatgtagataaccattgatgtcttaaaatatattgtag
|| |||||||| ||||||||||| ||| | ||| ||||||| || ||||||||| | || |||||||| || || || |||||||||||| |||| |  ||| | | |  | |  |  |||   |  ||       | || | || |||  ||| ||   |         | || || |  ||    || | |||      
GTCCTTCCACCACTTTGTGCAGAGCTTAGGAATGTGGTGATACAGCCAATGATTTTACCAATGGTTCTAACCATTGCAGAGTCTCAGgtactaatatctctttcttttcttcacttccatagaatacctaaattagtgctcgtgc-tgacggcattgtaatt-------aaaaatcaatattgcaccaagaaata------

upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G22870.1 (Arabidopsis thaliana), 5'ss of exon 8
GTGCTTCCACCTCTTTGTGCAGAACTTCGAAATTTGGTGATGCAACCAATGATTCTTCCCATGGTTCTCACAATAGCGGAGTCTCAGgtattaattttgcttgcatgtgataatggataagttgtctttgacctttcttgagcatgattgcac-tgctgtcctatgtagataaccattgatgtcttaaaatatattgtag
|||||||| ||||||||||| |||||| | |||||||| ||||||||| ||||||||||||||||||| || ||||| |||||||||||  |  || |  |   | ||  | |    |      ||        ||||   | | | || ||  | |       | || ||||   ||| | |  |              
GTGCTTCCTCCTCTTTGTGCTGAACTTAGGAATTTGGTTATGCAACCAGTGATTCTTCCCATGGTTCTAACTATAGCAGAGTCTCAGgtgctttttctaatcttaagtacttacatttcgtcaatcagatcgtattctattggaggtttacagataccagtgattctatataaaatttgtttttctt-------------

upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G71410.1 (Arabidopsis thaliana), 5'ss of exon 8
GTGCTTCCACCTCTTTGTGCAGAACTTCGAAATTTGGTGATGCAACCAATGATTCTTCCCATGGTTCTCACAATAGCGGAGTCTCAGgtattaattttgcttgcatgtgataatggataagttgtctttgacctttcttgagcatgattgcactgctgtcctatgtagataaccattgatgtcttaaaatatatt-gtag
|||||||||||||||||||| |||||| | ||||| ||  |||||||||| ||  | || |||||||| || |||||  |||||||||||   || ||      | ||||||| | |  |  |   |||      ||||||  |  | || ||||      |   |   | |   ||||   || ||| ||  || | ||
GTGCTTCCACCTCTTTGTGCGGAACTTAGGAATTTAGTTTTGCAACCAATAATCTTGCCAATGGTTCTAACTATAGCACAGTCTCAGgta---atctt------aagtgataacgaa--aactaatttta-----tcttgaa-accactg-actgaa----tgaatgcttgaaagttgaaacctaaaattacctttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29782673|gb|CB348188.2|CB348188
EST:     TGATGCAACCAATGATTCTTCCCATGGTTCTCACAATAGCGGAGTCTCAG                         GATAAAAATGAGTTTGAGTTATATACTCTGCCAGCTCTTGTTCCTGTCCTG
genomic: TGATGCAACCAATGATTCTTCCCATGGTTCTCACAATAGCGGAGTCTCAGgtattaattt ... tatattgtagGATAAAAATGAGTTTGAGTTATATACTCTGCCAGCTCTTGTTCCTGTCCTG