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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTTTATGAAGTTTGCTCCTGATTATTTTGCTTACATGAATCACTCCTTCACATCGGGGAGCCAAACTTGCCTTGCCAAAATTCTTGGGATTTATCAGgtttgttgttatacctttcttacatttaatgactatacttccatttttcttagcatttgaactactttgcag

Basic information

species Vitis vinifera
transcript Vv18s0086g00710.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0086g00710.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os08g01390.1 (Oryza sativa), 5'ss of exon 10
ATCCTTTATGAAGTTTGCTCCTGATTATTTTGCTTACATGAATCACTCCTTCACATCGGGGAGCCAAACTTGCCTTGCCAAAATTCTTGGGATTTATCAGgtttgttgttatacctttcttacatttaatg-actatacttccatttttctta-gcatttgaactactttgcag--------
 ||||| || || ||||| |||||||| ||     |  |  | || ||  |     | || |||||||||||||||||||||||  | || |||||||||||   ||   ||   |   |    |||| |  | |||| | |    ||| |   || |||     |  ||||          
GTCCTTCATAAAATTTGCCCCTGATTACTTCAAGCATGTTTACCATTCTCTAGACACTGGAAGCCAAACTTGCCTTGCCAAAATATTGGGAATTTATCAGgtacttttacattgataattggagtttatttcaatatattcctgactttatagtgcttttcttacaagttgcttcttctcag

upper sequence: Vv18s0086g00710.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G428386_T01 (Zea mays), 5'ss of exon 7
ATCCTTTATGAAGTTTGCTCCTGATTATTTTGCTTACATGAATCACTCCTTCACATCGGGGAGCCAAACTTGCCTTGCCAAAATTCTTGGGATTTATCAGgtt-tgttgttatacctttcttacatttaatgactat--acttccatttttctta--gcatttgaactactttgcag
 ||||| || || ||||| |||||||| ||     |  | || || ||  |     |||||||||| |||||||||||||||||  | ||||| ||||||||  |||| |     |  |  | | | |    |||     ||| |||   || |   |  ||| |            
GTCCTTCATAAAATTTGCGCCTGATTACTTCAGGCATGTCAACCATTCTCTGGACACGGGGAGCCAGACTTGCCTTGCCAAAATCTTAGGGATCTATCAGgtagtgttatcgactcccttcttcttcttcccactgctgtcttacatccatcctgtcgtgtttcag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56408279|gb|CX016531.1|CX016531
EST:     TCACATCGGGGAGCCAAACTTGCCTTGCCAAAATTCTTGGGATTTATCAN                         GTAATTATTAGACAGACAAAGAGTGGGAAAGAGATGAGACATGATCTGATG
genomic: TCACATCGGGGAGCCAAACTTGCCTTGCCAAAATTCTTGGGATTTATCAGgtttgttgtt ... tactttgcagGTAATTATTAGACAGACAAAGAGTGGGAAAGAGATGAGACATGATCTGATG
EST: gi|30125947|gb|CB911286.1|CB911286
EST:     TCACATCGGGGAGCCAAACTTGCCTTGCCAAAATTCTTGGGATTTATCAG                         GTAATTATTAGACAGACAAAGAGTGGGAAAGAGATGAGACATGATCTGATG
genomic: TCACATCGGGGAGCCAAACTTGCCTTGCCAAAATTCTTGGGATTTATCAGgtttgttgtt ... tactttgcagGTAATTATTAGACAGACAAAGAGTGGGAAAGAGATGAGACATGATCTGATG