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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTCTATGGCCCAGAAGGTCCCCGAGGAAGGTTGGACAATGCAGGATGGGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAGgtgagggggtgatttctttcttcgagtgcattcatggatttttgtgcctgagcagcatgcatcttgctggaccttctacatactgagatttgagacattaaaagatttttttctctatttttgccttgcacag

Basic information

species Vitis vinifera
transcript Vv18s0072g00370.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0072g00370.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G08920.1 (Glycine max), 5'ss of exon 8
GGTTTCTATGGCCCAGAAGGTCCCCGAGGAAGGTTGGACAATGCAGGATGGGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAGgtgagggggtgatttctttcttcgagtgcattcatggatttttgtgcctgagcagcatgcatcttgctggaccttctacatac-tgagatttgagacattaaaa---gatttttttctctatttttgccttgcacag
|||  || |||| || ||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||| || |||||        | |  | ||    |||| || |||  || ||||  |     | |      ||| || || |   |  |   |  || || |    |||||    |||  | ||||  |                
GGTGGCTTTGGCACAAAAGGTTCCTGAGGATGGTTGGACAATGCAGGATGGTACTCCATGGCCTGGGAACAATGTCAGAGATCATCCCGGAATGATACAAgtgag--------taccatgttatgatgcaatcttggtcttctgtg--tagattgaaaatgctttgttg-acatggcatgtttgtatgagtttaagtgttaaactgtgatgctattctacag---------------

upper sequence: Vv18s0072g00370.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G36790.1 (Glycine max), 5'ss of exon 8
GGTTTCTATGGCCCAGAAGGTCCCCGAGGAAGGTTGGACAATGCAGGATGGGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAGgtgagggggtgatttctttcttcgagtgcattcatggattt-ttgtgcctgagcagcatgcatcttgctggaccttctacatactgagatttgagacattaaaagatttttttctctatttttgccttgcacag
|||| | ||||| || ||||| || ||||| || ||||||||||||||||||||||| ||||| ||||||| |||||| || |||||||||||||| ||||||||      ||||   |||          |  || |  | ||||||| |    | ||   |    |||            || |                                                
GGTTGCAATGGCACAAAAGGTTCCTGAGGATGGCTGGACAATGCAGGATGGGACTCCGTGGCCCGGGAACAGTGTCAGAGATCATCCTGGAATGATTCAGgtgagta--ccattttggtctgaattctaggttgtgaaaatgttgtgccagttttg-ataagttcaactgtgatgcacttgcacag------------------------------------------------

upper sequence: Vv18s0072g00370.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA16G28080.1 (Glycine max), 5'ss of exon 7
GGTTTCTATGGCCCAGAAGGTCCCCGAGGAAGGTTGGACAATGCAGGATGGGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAGgtgagggggtgatttctttcttcgagtgcattcatggatttttgtgcctgagcagcatgcatcttgctggaccttctacatactgagatttgagacattaaaagatttttttctctatttttgccttgcacag
|||  || |||| || ||||| || ||||| |||||||||||||||||||| ||||||||||| |||||||||||||| || ||||| |||||||| || |||||        | || | ||    |||| || |||  || ||||       |  |||| |  | |   |     |   |       ||| ||   | ||  |   |  |  ||||                
GGTGGCTTTGGCACAAAAGGTTCCTGAGGATGGTTGGACAATGCAGGATGGTACTCCATGGCCCGGGAACAATGTCAGAGATCATCCCGGAATGATACAAgtgag--------tactatgttatgatgcaatcttggtcttctgtgtagattgaaaatgctttgt-caacatggcatgtttgtacgagtttaagtgttcaactgtgatgctattctacag-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351019334|gb|FQ429494.1|FQ429494
EST:     GGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAGTGATCCAG                         GTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCT
genomic: GGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAGgtgagggggt ... ccttgcacagGTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCT
EST: gi|351026053|gb|FQ428065.1|FQ428065
EST:     GGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAG                         GTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCT
genomic: GGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAGgtgagggggt ... ccttgcacagGTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCT
EST: gi|351025958|gb|FQ427970.1|FQ427970
EST:     GGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAG                         GTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCT
genomic: GGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAGgtgagggggt ... ccttgcacagGTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCT
EST: gi|351024090|gb|FQ423513.1|FQ423513
EST:     GGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAG                         GTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCT
genomic: GGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAGgtgagggggt ... ccttgcacagGTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCT
EST: gi|349826424|gb|FQ418515.1|FQ418515
EST:     GGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAG                         GTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCT
genomic: GGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAGgtgagggggt ... ccttgcacagGTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCT