1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAAACGCAAATCCTTTCTTGTCGGTGGATGCTCTGGAGAAAATGATGGAAGATCCAACAGTGCAAAAGATGGTTTATCCgtaatatagtttcttgcccttttattttatttgtgctttttctatatgacttagttttcaagattcagctcctcactcaaatctgtacttgtttaaatca...
species | Vitis vinifera |
transcript | Vv18s0041g01360.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GCTCTGGAGAAAATGATGGAAGATCCAACAGTGCAAAAGATGGTTTATCC CTATTTACCTGAGGAGATGAGGAACCCCACTACCTTCAAATEST: gi|110369051|gb|EC933194.1|EC933194
genomic: GCTCTGGAGAAAATGATGGAAGATCCAACAGTGCAAAAGATGGTTTATCCgtaatatagt ... ttctttacagCTATTTACCTGAGGAGATGAGGAACCCCACTACCTTCAAAT
EST: GCTCTGGAGAAAATGATGG-AGATCCAACAGTGCAAAAGATGGTTTATCC CTATTTACCTGAGGAGATGAGGAACCCCACTACCTTCAAATEST: gi|37183876|gb|CF603230.1|CF603230
genomic: GCTCTGGAGAAAATGATGGAAGATCCAACAGTGCAAAAGATGGTTTATCCgtaatatagt ... ttctttacagCTATTTACCTGAGGAGATGAGGAACCCCACTACCTTCAAAT
EST: GCTCTGGAGAAAATGATGGAAGATCCAACAGTGCAAAAGATGGTTTATCC CTATTTACCTGAGGAGATGAGGAACCCCACTACCTTCAAATEST: gi|30136598|gb|CB921936.1|CB921936
genomic: GCTCTGGAGAAAATGATGGAAGATCCAACAGTGCAAAAGATGGTTTATCCgtaatatagt ... ttctttacagCTATTTACCTGAGGAGATGAGGAACCCCACTACCTTCAAAT
EST: GCTCTGGAGAAAATGATGGAAGATCCAACAGTGCAAAAGATGGTTTATCC CTATTTACCTGAGGAGATGAGGAACCCCACTACCTTCAAATEST: gi|32268986|gb|CD718145.1|CD718145
genomic: GCTCTGGAGAAAATGATGGAAGATCCAACAGTGCAAAAGATGGTTTATCCgtaatatagt ... ttctttacagCTATTTACCTGAGGAGATGAGGAACCCCACTACCTTCAAAT
EST: GCTCTGGAGAAAATGATGGAAGATCCAACAGTGCAAAAGATGGTTTATCC CTATTTACCTGAGGAGATGAGGAACCCCACTACCTTCAAATEST: gi|30136267|gb|CB921605.1|CB921605
genomic: GCTCTGGAGAAAATGATGGAAGATCCAACAGTGCAAAAGATGGTTTATCCgtaatatagt ... ttctttacagCTATTTACCTGAGGAGATGAGGAACCCCACTACCTTCAAAT
EST: GCTCTGGAGAAAATGATGGAAGATCCAACAGTGCAAAAGATGGTTTATCC CTATTTACCTGAGGAGATGAGGAACCCCACTACCTTCAAATEST: gi|30126394|gb|CB911733.1|CB911733
genomic: GCTCTGGAGAAAATGATGGAAGATCCAACAGTGCAAAAGATGGTTTATCCgtaatatagt ... ttctttacagCTATTTACCTGAGGAGATGAGGAACCCCACTACCTTCAAAT
EST: GCTCTGGAGAAAATGATGGAAGATCCAACAGTGCAAAAGATGGTTTATCC CTATTTACCTGAGGAGATGAGGAACCCCACTACCTTCAAAT
genomic: GCTCTGGAGAAAATGATGGAAGATCCAACAGTGCAAAAGATGGTTTATCCgtaatatagt ... ttctttacagCTATTTACCTGAGGAGATGAGGAACCCCACTACCTTCAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAACGCAAATCCTTTCTTGTCGGTGGATGCTCTGGAGAAAATGATGGAAGATCCAACAGTGCAAAAGATGGTTTATCCgtaatatagtttcttgcccttttattttatttgtgctttttctatatgacttagttttcaagattcagctcctcactcaaatctgtacttgtttaaatca
- - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG