Sequence
atgc intronic sequence ATGC exonic sequenceGGTGGTACGGATACGGCGAATGAGAGAAGTAAATCAGGAGGCAGTTCTTCTTGCGTTGTGCTCCAAGACCTTCACAGCAAAAGCGATTATCTTCAGgttttttatttcaatacaagtcaaagttattagcttcatgaagtggtgaaactttttggtttttgtgttatgggatatgtaaatttattttgaaagatga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G25240.1 (Glycine max), 5'ss of exon 8
GGTGGTACGGATACGGCGAATGAGAGAAGTAAATCAGGAGGCAGTTCTTCTTGCGTTGTGCTCCAAGACCTTCACAGCAAAAGCGATTATCTTCAGgttttttatttcaatacaagtcaaagttattagcttcatgaagtggtgaaactttttggtttttg-tgttatgggatatgtaaatttattttgaaag-atga--------------------------------------------
||| || | ||||| ||||| | |||||||||||||| |||||||||||||| |||||||||| || || || | |||| || ||||||||||||| |||||| | ||| | || |||| | || || ||| || | | ||| || | || || | ||
GGTTGTTAGAATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCCAAAGTCATCATCTTCAGgttttc-atttcatcatcta-caagtctttttatttcagattttaagtctgctccttcatttgcactgctttatgattattatttcccttctgccactattctactacctctaaccaactgtttaatctatcattttgatgtgcag
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G11950.1 (Glycine max), 5'ss of exon 8
GGTGGTACGGATACGGCGAATGAGAGAAGTAAATCAGGAGGCAGTTCTTCTTGCGTTGTGCTCCAAGACCTTCACAGCAAAAGCGATTATCTTCAGgttttttatttcaatacaagtcaaagttattagcttcatg--aagtggtgaaactttttggttt-ttgtgttatgggatatgtaaatttattttgaaagatga
|| || | ||||| ||||| | |||||||||||||| |||||||||||||| |||||||||| || || || | |||| || ||||||||||||| |||||| | | || ||| | || | ||| | ||| || || || || | | | | ||||| | |
AGTTGTTAGAATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCCAAAGTCATCATCTTCAGgttttc-atttcattgtttactatgcttgttatgtatatagtatgtgatagtgttttatgaattgttaaaaaattctctttatgtagctatttgatgaaac--
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G15220.1 (Glycine max), 5'ss of exon 7
GGTGGTACGGATACGGCGAATGAGAGAAGTAAATCAGGAGGCAGTTCTTCTTGCGTTGTGCTCCAAGACCTTCACAGCAAAAGCGATTATCTTCAGgttttttatttcaatacaagtcaaagttattagcttcatgaagtggtgaaactttttggtttttg-tgttatgggatatgtaaatttattttgaaag-atga---------------------------------------------
||| || | ||||| ||||||| |||||||||||||| || ||||||||| | |||||||||| || || || | |||| || ||||||||||||| |||||| | ||| | || |||| | || || ||| || | | ||| || | || || | ||
GGTTGTTAGAATACGAAGAATGAGTGAAGTAAATCAGGAAGCTGTTCTTCTTTCAATGTGCTCCAAAACTTTTACTTCCAAAGTCATCATCTTCAGgttttc-atttcatcatcta-caagtctttttatttcagattttaagtctgctccttcatttgcactgctttatgattattatttcccttctgccactattctgctacctctaaccaaactgtaaaatctatcattttgatgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719083|gb|FC069336.1|FC069336EST: CTTCTTGCGTTGTGCTCCAAGACCTTCACAGCAAAAGCGATTATCTTCAG TGGAACCAAACAAGCTGCACATAGGTTGAAGATTTTGTTTGGATTGGCTGG
genomic: CTTCTTGCGTTGTGCTCCAAGACCTTCACAGCAAAAGCGATTATCTTCAGgttttttatt ... ttgttggcagTGGAACCAAACAAGCTGCACATAGGTTGAAGATTTTGTTTGGATTGGCTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGGTACGGATACGGCGAATGAGAGAAGTAAATCAGGAGGCAGTTCTTCTTGCGTTGTGCTCCAAGACCTTCACAGCAAAAGCGATTATCTTCAGgttttttatttcaatacaagtcaaagttattagcttcatgaagtggtgaaactttttggtttttgtgttatgggatatgtaaatttattttgaaagatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagat