Sequence
atgc intronic sequence ATGC exonic sequenceTCTGAATTCATCAACTTTCCCATATACCTCTGGGCAAGCAAAGAGGTTGATGTAGAGGTACCTGCAGATGAAGATGAGTCAAGTGATGAAGAAGAAACATgtaattgtcaattttttttttaatttttaatttttttagcgatgttatgaaaatctcatgctttcaaaattgcatataatctcatcaccttttcctggtctccttctgattatttcaattcctgcaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 8
TCTGAATTCATCAACTTTCCCATATACCTCTGGGCAAGCAAAGAGGTTGATGTAGAGGTACCTGCAGATGAAGATGAGTCAAGTGA-TGAAGAAGAAACATgtaat--tgtcaattttttttttaatttttaatttttttagcgatgttatgaaaatctcatgctttcaaaattgcatataatctcatcaccttttcctggtctccttctgattatttcaattcctgcaacag
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---------ATCAATTTCCCCATTTACTTGTGGGCAACCAAGGAGGTTGATGTGGAAGTGCCAGCTGATGAGGATGAGTCAAGTGAATCAAGTGAAGAAGAGGAATCATgtaagttttcagtttatgtttttatatctttta-gatgatacgtaagttatttgca--cataagtgctaaca----tattagcttttcttggcag-----------------------------
upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G37820.1 (Glycine max), 5'ss of exon 8
-TCTGAATTCATCAACTTTCCCATATACCTCTGGGCAAGCAAAGAGGTTGATGTAGAGGTACCTGCAGATGAAGATGAGTCAAGTGATGAAGAAGAAACATgta-----attgtcaattttttttttaatttttaattttttta----gcgatgttatgaaaatctcatgct--ttcaaaattgc--atataatctcatcaccttttcctggtctccttctgattatttcaattcctgcaacag
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CTCTGAATTTATTAACTTCCCTATCTATATTTGGGCAAGCAAAGAGGTTGATGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAtgtatgtatgtttttaagagttcagttggatctctccatttatatcctgtttcaacatgttgttttggtgtttgttcattcttgtttatttagttatggtaatttgaactgtcatccttacc-ttatttta-ttcctttaaca-
upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G40320.1 (Glycine max), 5'ss of exon 8
TCTGAATTCATCAACTTTCCCATATACCTCTGGGCAAGCAAAGAGGTTGATGTAGAGGTACCTGCAGATGAAGATGAGTCAAGTGATGAAGAAGAAACATgta-----attgtcaatt-ttttttttaatttttaatttttttagcgatgttatgaaaatctcatgct-----ttcaaaattgcatataatctcatcaccttttcctggtctccttctga--ttatttcaattcctgcaacag
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TCTGAATTTATTAACTTCCCTATCTATATTTGGGCAAGCAAAGAAGTTGATGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatatttttaagagttcagttggatctctccatttatatcctgtttcaagatgctgttttggtgtttgttcattcttgtatattatggttatggtaatttaaactgtcattcttaccttttttttattccttgaacag
upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT4G24190.2 (Arabidopsis thaliana), 5'ss of exon 8
---TCTGAATTCATCAACTTTCCCATATACCTCTGGGCAAGCAAAGAGGTTGATGTAGAGGTACCTGCAGATGAAGATGAGTCAAGTGATGAAGAAGAAACATgtaattgtcaattttttttttaatttttaatttttttagcgatgttatgaaaatctcatgctttcaaaattgcatataatctcatcaccttttcctggtctccttctgattatttcaattcctgcaacag
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TATTCTGAATTCATTAACTTCCCTATCTCCCTCTGGGCTAGCAAAGAGGTTGAAACCGAGGTCCCAGTTGAGGAAGATGAATCAGCTGATGAGGAA---ACTGgtgagtattaatgaaacaccatattataattttctgctgcagtgttatcttttttcccttcagtttaggcagccctgatttttggtaatggtacttgacttcag--------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30297571|gb|CB974365.1|CB974365EST: TGTAGAGGTACCTGCAGATGAAGATGAGTCAAGTGATGAAGAAGAAACAT CTGACAGCAGCTCTTCTGAGGAAGAAGTGGAAGATGAAGATGCTGAGAAAA
genomic: TGTAGAGGTACCTGCAGATGAAGATGAGTCAAGTGATGAAGAAGAAACATgtaattgtca ... cctgcaacagCTGACAGCAGCTCTTCTGAGGAAGAAGTGGAAGATGAAGATGCTGAGAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTGAATTCATCAACTTTCCCATATACCTCTGGGCAAGCAAAGAGGTTGATGTAGAGGTACCTGCAGATGAAGATGAGTCAAGTGATGAAGAAGAAACATgtaattgtcaattttttttttaatttttaatttttttagcgatgttatgaaaatctcatgctttcaaaattgcatataatctcatcaccttttcctggtctccttctgattatttcaattcctgcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA