1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAGTTACTTAAAAAGGATAATACCTATGTGTATATGTGTGGGCTGAAGGGAATGGAGAAGGGAATTGATGACATAATGGTGTCTTTGGCTGCTAGAGATGgtaaatatatccatgcaaaagttgattctgatttttctgaataaattactaatcattttgcaactgctctcttcttcttcctggttttcag
species | Vitis vinifera |
transcript | Vv18s0001g14450.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AATGGAGAAGGGAATTGATGACATAATGGTGTCTTTGGCTGCTAGAGATG GTATTGATTGGACCGAATACAANAGGCAATTGAAGAAGAGCGAGCAGTGGAEST: gi|351024744|gb|FQ430569.1|FQ430569
genomic: AATGGAGAAGGGAATTGATGACATAATGGTGTCTTTGGCTGCTAGAGATGgtaaatatat ... tggttttcagGTATTGATTGGACCGAATACAAAAGGCAATTGAAGAAGAGCGAGCAGTGGA
EST: AATGGAGAAGGGAATTGATGACATAATGGTGTCTTTGGCTGCTAGAGATG GTATTGATTGGACCGAATACAAAAGGCAATTGAAGAAGAGCGAGCAGTGAAEST: gi|37187297|gb|CF606650.1|CF606650
genomic: AATGGAGAAGGGAATTGATGACATAATGGTGTCTTTGGCTGCTAGAGATGgtaaatatat ... tggttttcagGTATTGATTGGACCGAATACAAAAGGCAATTGAAGAAGAGCGAGCAGTGGA
EST: AATGGAGAAGGGAATTGATGACATAATGGTGTCTTTGGCTGCTAGAGATG GTATTGATTGGACCGAATACAAAAGGCAATTGAAGEST: gi|351032748|gb|FQ462462.1|FQ462462
genomic: AATGGAGAAGGGAATTGATGACATAATGGTGTCTTTGGCTGCTAGAGATGgtaaatatat ... tggttttcagGTATTGATTGGACCGAATACAAAAGGCAATTGAAG
EST: AATGGAGAAGGGAATTGATGACATAATGGTGTCTTTGGCTGCTAGAGATG GTATTGATTGGACCGAATACAAAAGGCAATTGAAGAAGAGCGAGCAATGGAEST: gi|33404726|gb|CF210353.1|CF210353
genomic: AATGGAGAAGGGAATTGATGACATAATGGTGTCTTTGGCTGCTAGAGATGgtaaatatat ... tggttttcagGTATTGATTGGACCGAATACAAAAGGCAATTGAAGAAGAGCGAGCAGTGGA
EST: AATGGAGAAGGGAATTGATGACATAATGGTGTCTTTGGCTGCTAGAGATG GTATTGATTGGACCGAATACAAAAGGCAATTGAAGAAGAGCGAGCAGTGGGEST: gi|30325352|gb|CD008614.1|CD008614
genomic: AATGGAGAAGGGAATTGATGACATAATGGTGTCTTTGGCTGCTAGAGATGgtaaatatat ... tggttttcagGTATTGATTGGACCGAATACAAAAGGCAATTGAAGAAGAGCGAGCAGTGGA
EST: AATGGAGAAGGGAATTGATGACATAATGGTGTCTTTGGCTGCTAGAGATG GTATTGATTGGACCGAATACAANAGGCAATTGAAGAAGAGCGAGCAGTGGAEST: gi|349826752|gb|FQ418843.1|FQ418843
genomic: AATGGAGAAGGGAATTGATGACATAATGGTGTCTTTGGCTGCTAGAGATGgtaaatatat ... tggttttcagGTATTGATTGGACCGAATACAAAAGGCAATTGAAGAAGAGCGAGCAGTGGA
EST: AATGGAGAAGGGAATTGATGACATAATGGTGTCTTTGGCTGCTAGAGATG GTATTGATTGGACCGAATACAAAAGGCAATTGAAGAAGAGCGAGCAGTGGA
genomic: AATGGAGAAGGGAATTGATGACATAATGGTGTCTTTGGCTGCTAGAGATGgtaaatatat ... tggttttcagGTATTGATTGGACCGAATACAAAAGGCAATTGAAGAAGAGCGAGCAGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTTACTTAAAAAGGATAATACCTATGTGTATATGTGTGGGCTGAAGGGAATGGAGAAGGGAATTGATGACATAATGGTGTCTTTGGCTGCTAGAGATGgtaaatatatccatgcaaaagttgattctgatttttctgaataaattactaatcattttgcaactgctctcttcttcttcctggttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG