Sequence
atgc intronic sequence ATGC exonic sequenceGCAAGGCCTCGAGACAGCTACAAATTGTGTTGATGATATGGATGAATGGTTAGGCATTTTCAATGTGAAACTTAGACACATGAGAGAGGATATTGAGTCGgtaggggcctctgcatgctaaattgcgattttaagtctttctgtaatgattctatctagcccatgtttatttttgtctagcgtgtgactgcgtctggata...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os03g42750.1 (Oryza sativa), 5'ss of exon 8
GCAAGGCCTCGAGACAGCTACAAATTGTGTTGATGATATGGATGAATGGTTAGGCATTTTCAATGTGAAACTTAGACACATGAGAGAGGATATTGAGTCGgtaggggcctctgcatgctaaattgcgatttta-agtctttctgtaatgattctatctagccc---atgtttatttttgtctagcgtgtgactgcgtctggata
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GCAGGGTCTGGATGCTGCTAGTGCAACCGTAGATGATATGGATGAGTGGTTACGCATTTTTAATATGAAGCTCAGGCATATGAGAGAAGATATTGCATCGgtatg--cttatggttacatgtttgatattatgtagaagttatgaaattctcttaccaacatctagaaattaaatatcttcttgcctatagttacacatgtc--
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os11g17600.3 (Oryza sativa), 5'ss of exon 8
GCAAGGCCTCGAGACAGCTACAAATTGTGTTGATGATATGGATGAATGGTTAGGCATTTTCAATGTGAAACTTAGACACATGAGAGAGGATATTGAGTCGgtaggggcctctgca-tgctaaattgcgatttt--aagt-ctttctgtaatgattctatctagcccatgtttatttttgtctagcgtgtgactgcgtctggata
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GGAGGGCTTAGAAATAGCTAGTATATGTGTTGAAGATTTTGATGAATGGCTTGGTATTTTCAATGTAAAGCTTAGGCATATGAGAGAGGATATACAATCTgtacgtttccgtttacttctgaatccatatttccgaagtgtcttcttcaatttctctatc--atcttctttcagacagttctgaaatgaaagcacattttaa--
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G099056_T01 (Zea mays), 5'ss of exon 8
GCAAGGCCTCGAGACAGCTACAAATTGTGTTGATGATATGGATGAATGGTTAGGCATTTTCAATGTGAAACTTAGACACATGAGAGAGGATATTGAGTCGgtaggggcctctgcatgctaaattgc--gattttaagtctttctgtaatgattctatctagcccatgtttatttttgtctagcgtgtgactgcgtctggata
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GCAGGGTCTGGATGCTGCTAGTGCAACTGTAGATGATATGGATGAGTGGCTACGGATTTTCAATCTGAAGCTGAGGCACATGAGAGAAGATATTGCATCGgtatgtttgaggagttttttagctgtctgatttgaagcggatatatatttcttct--ctagtttatttgttttactgttagaagcatagctatgaaaagttg
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA04G03710.1 (Glycine max), 5'ss of exon 8
GCAAGGCCTCGAGACAGCTACAAATTGTGTTGATGATATGGATGAATGGTTAGGCATTTTCAATGTGAAACTTAGACACATGAGAGAGGATATTGAGTCGgtaggggcctctgcatgctaaattgcgattttaagtctttctgtaatg-attctatctagcccatgtttatttttgtctagcgtgtgactgcgtctggata
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GCAAGGGCTTGAAGCAGCATCAAATTGCGTGGAAGACATGGATGAATGGTTAGGCATGTTCAATGTAAAGCTTCGACACATGAGGGAAGATATTGAATCAgtaagtgcttgtagagttcaagtttggagcataatttgctttgcaatttactttgtggtatttatagcagtgttta-ctggaaccctagttcattaagttt
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G18840.1 (Glycine max), 5'ss of exon 8
GCAAGGCCTCGAGACAGCTACAAATTGTGTTGATGATATGGATGAATGGTTAGGCATTTTCAATGTGAAACTTAGACACATGAGAGAGGATATTGAGTCGgtaggggcctctgcatgctaaattgcgattttaagtctttctgtaatgatt--ctatctagcc--catgtttatttttgtctagcgtgtgactgcgtctggata
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GCAAGGGCTTGATGCTGCAACCAGTTGTGTGGAAGATATGGATGAATGGTTAAGCATATTCAATGTAAAACTCCGGCACATGAGGGAGGATATTGCATCAgtaaggacctgtgcccgtcagtttaagaatataaatttcctagatacaatttactctctggttgtaatggctgtgtttgctggaagcatgatt-catatgt---
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G08520.1 (Glycine max), 5'ss of exon 1
GCAAGGCCTCGAGACAGCTACAAATTGTGTTGATGATATGGATGAATGGTTAGGCATTTTCAATGTGAAACTTAGACACATGAGAGAGGATATTGAGTCGgtaggggcctctgcatgctaaattgcgattttaagtctttctgtaatgatt--ctatctagcc--catgtttatttttgtctagcgtgtgactgcgtctggata
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GCAAGGGCTTGATGCTGCAACCAGTTGTGTGGAAGATATGGATGAATGGTTAAGCATATTCAATGTAAAACTCCGGCACATGAGGGAGGATATTGCATCAgtaaggacctgtgcccttcagtttaagaatataaacttcctagatacaatttactctctggttgtaatggccgtgtttgctggaagcatggtt-catttgt---
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G36540.1 (Glycine max), 5'ss of exon 8
GCAAGGCCTCGAGACAGCTACAAATTGTGTTGATGATATGGATGAATGGTTAGGCATTTTCAATGTGAAACTTAGACACATGAGAGAGGATATTGAGTCGgtaggggcc-tctgcatgctaaattgcgattttaagtctttctgtaatgattctatctagcc-catgtttatttttgtctagcgtgtgactgcgtctggata
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GCAAGGACTTGATGCCGCAACCAGTGTTGTGGAAGATATGGATGAATGGTTAAGCATATTCAATGTAAAACTCCGGCACATGAGGGAGGATATTGCATCAgtaaggaccctgtacccttcaatttaagaatataaat-ttccagatacaatttactctggttgtacatttgcttg-gttttctttgctcctttgttaaggca
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G47560.1 (Arabidopsis thaliana), 5'ss of exon 8
GCAAGGCCTCGAGACAGCTACAAATTGTGTTGATGATATGGATGAATGGTTAGGCATTTTCAATGTGAAACTTAGACACATGAGAGAGGATATTGAGTCGgtaggggcctctgcatgctaaattgcgattttaagtctt--tctgtaatgatt-ctatctagcccatgtttatttttgtctagcgtgtgactgcgtctggata
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GAATGGACTAGAGGCAGCAACAAATATCGTTGATGACATGGATGAATGGTTAGGAATATTCAACATTAAACTTAGACACATGAGGGAAGACATTGAATCGgtaggactcttgaccta-taaatgatctttttttgctttgttttattataaggacaatgtcactgcagtgagaaattagttgttgtatg-ttgtcaataaac-
upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G47550.2 (Arabidopsis thaliana), 5'ss of exon 8
GCAAGGCCTCGAGACAGCTACAAATTGTGTTGATGATATGGATGAATGGTTAGGCATTTTCAATGTGAAACTTAGACACATGAGAGAGGATATTGAGTCGgtaggggcctctgcatgctaaattgcgattttaagtct-ttctgtaatgatt-ctatctagcccatgtttatttttgtctagcgtgtgactgcgtctggata
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GAATGGACTAGAGGCAGCAACAAATATCGTTGATGACATGGATGAATGGTTAGGAATATTCAACATTAAACTTAGACACATGAGGGAAGACATTGAATCGgtaggactcttgaccta-taaatgatcttttttgctgtgttctattatgaggacaatgtcactgcagtgagaaattagttgttgtatg-ttgtcaataaactMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254916610|gb|GR905436.1|GR905436EST: TAGGCATTTTCAATGTGAAACTTAGACACATGAGAGAGGATATTGAGTCG ATAGAAACCCGCAATAACAAGTTGGAGATGCAATCTGTAAACAATAAAGCA
genomic: TAGGCATTTTCAATGTGAAACTTAGACACATGAGAGAGGATATTGAGTCGgtaggggcct ... tgacatgcagATAGAAACCCGCAATAACAAGTTGGAGATGCAATCTGTAAACAATAAAGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAAGGCCTCGAGACAGCTACAAATTGTGTTGATGATATGGATGAATGGTTAGGCATTTTCAATGTGAAACTTAGACACATGAGAGAGGATATTGAGTCGgtaggggcctctgcatgctaaattgcgattttaagtctttctgtaatgattctatctagcccatgtttatttttgtctagcgtgtgactgcgtctggata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT