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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATGGATATCAATTGCTTTTCCTTAGTGCACGAGCAATTTCTCAGGCCTATCACACTAGGCAATTTTTATTCAATCTTAAGCAGgtgagggagaattgtttttacttcttgatttgaagtgagaaatcaaaatttaggaaccctgaatgttttatttattttattatttattcctttcttttaaagaatatcatttttcatattttcag

Basic information

species Vitis vinifera
transcript Vv18s0001g10680.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g10680.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G36130.1 (Glycine max), 5'ss of exon 7
GAAAATGGATATCAATTGCTTTTCCTTAGTGCACGAGCAATTTCTCAGGCCTATCACACTAGGCAATTTTTATTCAATCTTAAGCAGgtgagggagaattgtttttact---tcttgatttgaagtgagaaatcaaaatttaggaaccctgaatgttttatttattttattatttattcctttcttttaaagaatatcatttttcatattttcag
| |||||| || ||  | ||||| || ||||| || ||||| |||||||||||||| || || |||||| ||| ||| |||||||||||||   | ||  ||||  | |   | || |||   |  ||  || ||| |   |  ||    ||| |   | |  ||  | |||||  ||   || |  |  ||                       
GGAAATGGCTACCAGCTACTTTTTCTCAGTGCTCGTGCAATATCTCAGGCCTATCATACCAGACAATTTCTATGCAACCTTAAGCAGgtgataaataa--gtttcaaatcaatattaattgttatggactaaacaagacgaaaaaaaaaagaaagcagtttacatcctcttattccttttgttatgatgcag-----------------------

upper sequence: Vv18s0001g10680.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA04G04060.1 (Glycine max), 5'ss of exon 11
GAAAATGGATATCAATTGCTTTTCCTTAGTGCACGAGCAATTTCTCAGGCCTATCACACTAGGCAATTTTTATTCAATCTTAAGCAGgtgagg-gagaatt--gtttttacttcttgatttgaagtgagaaatcaaaatttaggaaccctgaatgttttatttattttattatttattcctttcttttaaagaatatcatttttcatattttcag
|||||||| |||||| ||||||| || ||||| ||  |||||||||||||||||   ||  ||||||| ||| | || ||||| ||||||| | |  ||||  |   | | ||  | ||    |  || |||    ||| ||  |      || | | | |  |||||  | ||||||  | | | ||  ||                       
GAAAATGGTTATCAACTGCTTTTTCTCAGTGCTCGTTCAATTTCTCAGGCCTATATTACACGGCAATTCTTACTAAACCTTAAACAGgtgatgtgtaaatttagcaatcagtttctaatccatatggacaaa----aatataaaaggaaataaagctatttacattttcatttttattt-tgtatattgcag-----------------------