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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCAAGTGCCTATGCACGTCTTTATGATTATGCACGTATCCGCAAGgtaagagattttggtttgagggacactactgcgttcatcatagtcacaacattaaagttctctattattattttaaagtctaaatgtttagaaatcgtgtaactttaaattcttaggatttaacag

Basic information

species Vitis vinifera
transcript Vv18s0001g07960.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g07960.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G36280.1 (Glycine max), 5'ss of exon 8
TTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCAAGTGCCTATGCACGTCTTTATGATTATGCACGTATCCGCAAGgtaagagattttggtttgagggacactactgcgttcatcatagtcacaacattaaagttctctattattattttaaagtctaaatgtttagaaatcgtgtaactttaaattcttaggatttaacag
|||||||||||||| || || || || |||||| |||| |||||||| || ||||| ||||| || |||||||||||||||||| | ||||||||||   || |  | |  ||  ||     |  ||   | ||  | | |||| |  |||     || ||  | || ||   |  ||| || ||| | || ||                         
TTGGAGAAAAGTGCAGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaatttatatctgatacagaaac----ttaggtatttaatgtttagaacaattcagtc----atgatggtattgaatcttttatgctt-gaatttgtatag------------------------

upper sequence: Vv18s0001g07960.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G38160.2 (Glycine max), 5'ss of exon 8
TTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCAAGTGCCTATGCACGTCTTTATGATTATGCACGTATCCGCAAGgtaagagattttggtttgagggacactactgcgttcatcatagtcacaacattaaagttctctattattattttaaagtctaaatgtttagaaatcgtgtaactttaaattcttaggatttaacag
|||||||||||||| |  || || || |||||| |||| |||||||| || ||||| ||||| || |||||||||||||||||| | ||||||||||   || |  | |  ||  ||     |  ||   | ||  | | |||| |  |||     || || || || ||   || ||| || ||| | ||  |                         
TTGGAGAAAAGTGCAGTACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaaattatatctgatacagaaac----ttaggtatttaatgtttagaacaattcagtc----atgatgatattgaatcttatatgctt-gaatttgtacag------------------------

upper sequence: Vv18s0001g07960.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 8
TTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCAAGTGCCTATGCACGTCTTTATGATTATGCACGTATCCGCAAGgtaagagattttggtttgagggacactactgcgttcatcatagtcacaacattaaagttctctattattattttaaagtctaaatgtttagaaatcgtgtaactttaaattcttaggatttaacag
 | || || ||||| |  || |||||||| ||||| |||||||| || |||||||| ||||| ||||| ||||| ||||||||||| || |||||||   |||   || | |   || ||   | ||  |   |||| |||| | |     | |  |   ||||      |  ||||   ||  |                                  
CTAGAAAAGAGTGCCGTGCTTTTCAGACCGAAACTTATTGTTGCGGGTGCAAGTGCTTATGCTCGTCTATATGACTATGCACGTATTCGTAAGgtaaagtatt---gtctca---actcttgagtgtgaagtttagttacaaaagttgcagttttcaaggttat------gcataaaaaattgcag---------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352776821|gb|FQ472708.1|FQ472708
EST:     CTGGCGCAAGTGCCTATGCACGTCTTTATGATTATGCACGTATCCGCAAG                         GTGTGTGACCAGCAGAAAGCTGTCATGTTGGCAGACAT
genomic: CTGGCGCAAGTGCCTATGCACGTCTTTATGATTATGCACGTATCCGCAAGgtaagagatt ... gatttaacagGTGTGTGACAAGCAGAAAGCTGTCATGTTGGCAGACAT
EST: gi|110383662|gb|EC948045.1|EC948045
EST:     CTGGCGCAAGTGCCTATGCACGTCTTTATGATTATGCACGTATCCGCAAG                         GTGTGTGACAAGCAGAAAGCTGTCATGTTGGCAGACATGGCACATATTAGT
genomic: CTGGCGCAAGTGCCTATGCACGTCTTTATGATTATGCACGTATCCGCAAGgtaagagatt ... gatttaacagGTGTGTGACAAGCAGAAAGCTGTCATGTTGGCAGACATGGCACATATTAGT
EST: gi|352781776|gb|FQ469074.1|FQ469074
EST:     CTGGCGCAAGTGCCTATGCACGTCTTTATGATTATGCACGTATCCGCAAG                         GTGTGTGACAAGCAGAAAGCTGTCCTGTTGGCA
genomic: CTGGCGCAAGTGCCTATGCACGTCTTTATGATTATGCACGTATCCGCAAGgtaagagatt ... gatttaacagGTGTGTGACAAGCAGAAAGCTGTCATGTTGGCA
EST: gi|110359383|gb|EC920779.1|EC920779
EST:     CTGGTGCAAGTGCCTATGCACGTCTTTATGATTATGCACGTATCCGCAAG                         GTGTGTGACAAGCAGAAAGCTGTCATGTTGGCAGACATGGCACATATTAGT
genomic: CTGGCGCAAGTGCCTATGCACGTCTTTATGATTATGCACGTATCCGCAAGgtaagagatt ... gatttaacagGTGTGTGACAAGCAGAAAGCTGTCATGTTGGCAGACATGGCACATATTAGT