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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGGGTAGTTATTCATGATCCTATTGTTACATCTTGTGAAGATAAATTCCTAAATATGGCAAATGGGAATGCTTCTTTTGATATTCACCATCCATGCAGgtaaacatttgttggttctctattaacctttttttttaattgtttactagaattggtgtctctttctttcttaaagtcttaatcttgaagttaaagaaaagcctcacacactgaagtctctattagccttttttattctttactgaaataggtgtgtttctatttcttgaag

Basic information

species Vitis vinifera
transcript Vv18s0001g07630.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G36070.1 (Glycine max), 5'ss of exon 8
ACAGGGTAGTTATTCATGATCCTATTGTTACATCTTGTGAAGATAAATTCCTAAATATGGCAAATGGGAATGCTTCTTTTGATATTCACCATCCATGCAGgtaaac-atttgttggttctctattaacctttttttttaattgtttactagaattggtgtctctttctttcttaaagtcttaatcttgaagttaaagaaaagcctcacacactgaagtctctattagccttttttattctttactgaaataggtgtgtttctatttcttgaag
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ATCGAGTGGTTATTCATGATTCCACCGTCACATCTTGCAATGATAATCACTTAAATGTGGCAAATGGTAATGCTGTGTTTGATATTCACCATCCTTGCAGgtatttgaagttgtgcatgttgatttatggctgttgtta-ttgtttactaaacttgata-caatgaaactgttgta-tctt--tcttgaag----------------------------------------------------------------------------------