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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTAGGCGGATAGCAGGGGGCAAGTGGGCAAGCAATAATGGACAAGCCTGCATTGCTCCTGATTATATTGTCACAACAAAAGACTTTGCTCCAAAGTTGgtaaggctgctaatatgtatgaaattagtttggtatttattcctctgtttatttcattttcctctcctgttactttttctccag

Basic information

species Vitis vinifera
transcript Vv18s0001g02440.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g02440.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G24140.1 (Glycine max), 5'ss of exon 6
AATTAGGCGGATAGCAGGGGGCAAGTGGGCAAGCAATAATGGACAAGCCTGCATTGCTCCTGATTATATTGTCACAACAAAAGACTTTGCTCCAAAGTTGgtaaggctgctaatatgtatgaaattagtttggtatttattcctctgtttatttcattttcctctcctgttactttttctccag
||  || || |||   |  || |||||||     ||||||||||||||||||||| |||| ||||||||| | ||||| ||||||| |||||| ||||||||||      |  |     ||   ||||  |  ||   |||  |  |||| |||  | ||    ||||  || || |       
AACAAGACGAATAATTGCAGGAAAGTGGGGTTCTAATAATGGACAAGCCTGCATTTCTCCAGATTATATTATAACAACTAAAGACTATGCTCCCAAGTTGgtaataagttttttccaagtgttgttagaatcctaa--atttgttggtttgtttagtgtttggttccttctatttctag-----

upper sequence: Vv18s0001g02440.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA04G42740.1 (Glycine max), 5'ss of exon 6
AATTAGGCGGATAGCAGGGGGCAAGTGGGCAAGCAATAATGGACAAGCCTGCATTGCTCCTGATTATATTGTCACAACAAAAGACTTTGCTCCAAAGTTGgta--aggctgctaatatgtatgaaattagtttggtatttattcctctgtttatttcattttcctctcctgttactttttctccag
|  ||| || |||   |  |||||||||| |   || |||||||||||||||||| |||| |||||| || | ||||||||||||| |||||| |||||||||  |   |     ||||| | |    ||||  | ||  ||  || |||||||||  | ||    ||||  || || |       
AGCTAGACGAATAATTGCTGGCAAGTGGGGATTGAACAATGGACAAGCCTGCATTTCTCCCGATTATGTTATAACAACAAAAGACTATGCTCCCAAGTTGgtatgaaattttccctatgtgtaattggagttatgaatccatgtctttgtttatttattgtttgattcctcctatttctag-----

upper sequence: Vv18s0001g02440.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G26390.1 (Glycine max), 5'ss of exon 6
AATTAGGCGGATAGCAGGGGGCAAGTGGGCAAGCAATAATGGACAAGCCTGCATTGCTCCTGATTATATTGTCACAACAAAAGACTTTGCTCCAAAGTTGgtaa-ggctgctaatatgtatgaaattagtttggtatttattcctctgtttatttcattttcctctcctgttactttttctccag
||  || || |||   |  || |||||||     |||||||| |||||||||||| |||| ||||||||| | ||||| ||||||| |||||| ||||||||||    |  |    |   ||  |||||  |  ||   |||  |  |||| ||   | ||  | ||||  || || |       
AACAAGACGAATAATTGCAGGAAAGTGGGGTTCTAATAATGGGCAAGCCTGCATTTCTCCAGATTATATTATAACAACTAAAGACTATGCTCCCAAGTTGgtaataaattttttcctaagtgttattagaattctaa--atttgttggtttgttcagtgtttgtttccttctatttctag-----

upper sequence: Vv18s0001g02440.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA06G12010.1 (Glycine max), 5'ss of exon 6
AATTAGGCGGATAGCAGGGGGCAAGTGGGCAAGCAATAATGGACAAGCCTGCATTGCTCCTGATTATATTGTCACAACAAAAGACTTTGCTCCAAAGTTGgtaagg--ctgctaatatgtatgaaattagtttggtatttattcctctgtttatttcattttcctctcctgttactttttctccag
|  |||||| |||      |||||||||| |   ||||||||||||||||||||| |||| |||||| || | ||||||||||| | |||||| ||||||||| ||  ||     ||||| | |    ||||  | || |||  || |||||||||  | ||      ||   | || |       
AGCTAGGCGAATAATTTCTGGCAAGTGGGGATTGAATAATGGACAAGCCTGCATTTCTCCAGATTATGTTATAACAACAAAAGATTGTGCTCCCAAGTTGgtatggaactttccctatgtgtaattagagttctgaatctatgtctttgtttatttattgtttgatatctccaatttctag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110361747|gb|EC925243.1|EC925243
EST:     GCATTGCTCCTGATTATATTATCACAACAAAAGACTTTGCTCCAAAGTTG                         ATAGATGCTCTGAAACATGAATTGGAGGCGTGGTATGGAAAGGATCCATTG
genomic: GCATTGCTCCTGATTATATTGTCACAACAAAAGACTTTGCTCCAAAGTTGgtaaggctgc ... ttttctccagATAGATGCTCTGAAACATGAATTGGAGGCGTGGTATGGAAAGGATCCATTG
EST: gi|110387056|gb|EC951696.1|EC951696
EST:     GCATTGCTCCTGATTAT-TTATCACAACAAAAGACTTTGCTCCAAAGTTG                         ATAGATGCTCTGAAACATGATTTGGAGGCGTGG
genomic: GCATTGCTCCTGATTATATTGTCACAACAAAAGACTTTGCTCCAAAGTTGgtaaggctgc ... ttttctccagATAGATGCTCTGAAACATGAATTGGAGGCGTGG
EST: gi|110363695|gb|EC927304.1|EC927304
EST:     GACTTTGCTCCAAAGTTG                         ATAGATGCTCTGAAACATGAATTGGAGGCGTGGTATGGAAAGGATCCATTG
genomic: GACTTTGCTCCAAAGTTGgtaaggctgc ... ttttctccagATAGATGCTCTGAAACATGAATTGGAGGCGTGGTATGGAAAGGATCCATTG
EST: gi|33405976|gb|CF211603.1|CF211603
EST:     GCATTGCTCCTGATTATATTATCACAACAAAAGACTTTGCTCCAAAGTTG                         ATAGATGCTTTGAAACATGAATTGGAGGCGTGGTATGGAAAGGATCCATTG
genomic: GCATTGCTCCTGATTATATTGTCACAACAAAAGACTTTGCTCCAAAGTTGgtaaggctgc ... ttttctccagATAGATGCTCTGAAACATGAATTGGAGGCGTGGTATGGAAAGGATCCATTG
EST: gi|33406064|gb|CF211691.1|CF211691
EST:     GCATTGCTCCTGATTATATTATCACAACAAAAGACTTTGCTCCAAAGTTG                         ATAGATGCTCTGAAACATGAATTGGAGGCGTGGTATGGAAAGGATCCATTG
genomic: GCATTGCTCCTGATTATATTGTCACAACAAAAGACTTTGCTCCAAAGTTGgtaaggctgc ... ttttctccagATAGATGCTCTGAAACATGAATTGGAGGCGTGGTATGGAAAGGATCCATTG