Sequence
atgc intronic sequence ATGC exonic sequenceGTGTGAGCCATTTGACACCTACCCAAGAACATATGACCTATTGCATGCAGCGGGTCTCTTCTCCATAGAGCAAAAAAGgttgaatttttttccattatttgtgtctttgtatctatccacacttaacaggggaaagtaatccttttatatctatatcgtatatgtgcacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g01600.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G24900.1 (Glycine max), 5'ss of exon 8
GTGTGAGCCATTTGACACCTACCCAAGAACATATGACCTATTGCATGCAGCGGGTCTCTTCTCCATAGAGCAAAAAAGgttgaatttttttccattatttgtgtctttgtatctatccacacttaacaggggaaagtaatccttttatatctatatcgtatatgtgcacag
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GTGTGAACCATTTGATACATACCCAAGAACATATGATCTGCTGCATGCAGCAGGTCTTTTCTCTGTTGAAAAAAAGAGgt-gtgtcatcacactatacttatgcctctataggcacatgccattattggtgtttgatgaattatttctttctttcag--------------
upper sequence: Vv18s0001g01600.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G77260.1 (Arabidopsis thaliana), 5'ss of exon 8
GTGTGAGCCATTTGACACCTACCCAAGAACATATGACCTATTGCATGCAGCGGGTCTCTTCTCCATAGAGCAAAAAAGgttgaatttttttccattatttgtgtctttgtatctatccacacttaacaggggaaagtaatccttttatatctatatcgtatatgtgcacag
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GTGTGAGCCATTTGACACCTACCCAAGAACCTATGATCTGATACATGCTGCATTTCTCTTCTCTGTTGAGAAAAAGAGgtaaaaagatttaaacttcgtttt-tctttttatcctgaatccaaaaataaaggtcaggaacttgattggggtaatgaattgtg-gaacatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|28968089|gb|CB347122.1|CB347122EST: ACATATGACCTATTGCATGCAGCGGGTCTCTTCTCCATAGAGCAAAAAAG ATGTAATATCTCAAACATCATGCTTGAGATAGATCGAATGCTAAGACCTGG
genomic: ACATATGACCTATTGCATGCAGCGGGTCTCTTCTCCATAGAGCAAAAAAGgttgaatttt ... atgtgcacagATGTAATATCTCAAACATCATGCTTGAGATAGATCGAATGCTAAGACCTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGTGAGCCATTTGACACCTACCCAAGAACATATGACCTATTGCATGCAGCGGGTCTCTTCTCCATAGAGCAAAAAAGgttgaatttttttccattatttgtgtctttgtatctatccacacttaacaggggaaagtaatccttttatatctatatcgtatatgtgcacag
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