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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTTATTCTCCAAACGCATATCGTGGTTTTGCTCGTGAGTTCATTAAAGATTTGGAAAGGATCAGgttgttgcctttgacactatttcagcagtgattggcatcacatagttcatgaaataatgctgttttcctgcttttgtagactttcacttgatgctgtcagctattttcattttgacacctttccggttggttcattgtag

Basic information

species Vitis vinifera
transcript Vv18s0001g00440.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g00440.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G402242_T03 (Zea mays), 5'ss of exon 8
GCATTTATTCTCCAAACGCATATCGTGGTTTTGCTCGTGAGTTCATTAAAGATTTGGAAAGGATCAGgttgttgcctttgacactatttcagcagtgattggcatcacata-gttcatgaaataatgctgttttcctgcttttgtagactttcacttgatgctgtcagctattttcattttgacacctttccggttggttcattgtag
|||| ||||| ||||| ||||| ||||||||||||||||| || ||||||||||| ||||| || ||||   | |   ||| | | | ||   |   ||   ||    ||  || ||||   |  | | |    | ||  |  ||||||  | | | | ||| |                                            
GCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAGgtaaatac---tga-attttctccatatatatattcaatggatgtgtgcatgttctttttcagcagccttggctcagtagacgatgaat-gttgcag--------------------------------------------

upper sequence: Vv18s0001g00440.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G402242_T01 (Zea mays), 5'ss of exon 7
---------------------------------GCATTTATTCTCCAAACGCATATCGTGGTTTTGCTCGTGAGTTCATTAAAGATTTGGAAAGGATCAGgttgttgcctttgacactatttcagcagtgattggcatcacatagttcatgaaataatgctgttttcctgcttttgtagactttcacttgatgctgtcagctattttcattttgacacctttccggttggttcattgtag
                                 |||| ||||| ||||| ||||| ||||||||||||||||| || ||||||||||| ||||| || ||||   | |   |||   |  | ||      ||    ||   || |   |||     ||| | |||| | |                                                                      
AGAATGGGTTAATTTGGCTATATCATGATCCAGGCATCTATTCACCAAATGCATACCGTGGTTTTGCTCGTGAATTTATTAAAGATTTAGAAAGAATGAGgtaaatac---tgaattttctccat-----atatatattcaatgg---atgtgtgcatgttctttttcag----------------------------------------------------------------------

upper sequence: Vv18s0001g00440.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA04G00350.1 (Glycine max), 5'ss of exon 2
GCATTTATTCTCCAAACGCATATCGTGGTTTTGCTCGTGAGTTCATTAAAGATTTGGAAAGGATCAGgttgttgcctttgacactatttcagcagtgattggcatcacatagttcatgaaataatgctgttttcctgctt-ttgtagactttcacttgatgctgtcagctattttcattttgacacctttccggttggttcattgtag
||||||| ||||| || |||||||| ||||||||||| |||||||| ||||||||||| || |||||||    ||   | |  | ||||       | |||   ||   || |   | | | | ||||||  |  || || || || | |                                                          
GCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAAAGATTTGGAGAGAATCAGgt----gctgattatccaattt-------gcttgctttcttgtactcgctcacaaattgctgtgcttatgtttattatacaatgcag------------------------------------------------------

upper sequence: Vv18s0001g00440.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT2G44270.2 (Arabidopsis thaliana), 5'ss of exon 9
GCATTTATTCTCCAAACGCATATCGTGGTTTTGCTCGTGAGTTCATTAAAGATTTGGAAAGGATCAGgttgttgcctttgacactatttcagcagtgattggcatcacatagttcatgaaataatgctgttttcctgcttttgtagactttcacttgatgctgtcagctattttcattttgacacctttccggttggttcattgtag
||||||| ||||| || ||||||||||| ||||| ||||||||||| |||||||||||||| || ||||| || |      |  |  || || |     | | || | |||        || | |   | | ||   |||    | | |                                                          
GCATTTACTCTCCTAATGCATATCGTGGGTTTGCCCGTGAGTTCATCAAAGATTTGGAAAGAATAAGgttctttctcaacccttttgtttagtatccgctagaatgaaataa------gaaaactagagatctctaacttacacaaagtgcag------------------------------------------------------

upper sequence: Vv18s0001g00440.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S54_267V6.1 (Physcomitrella patens), 5'ss of exon 7
GCATTTATTCTCCAAACGCATATCGTGGTTTTGCTCGTGAGTTCATTAAAGATTTGGAAAGGATCAGgttgttgcctttgacactatttcagcagtgattggcatcacatagttcatgaaataatgctgttttcctgcttttgtagactttcacttgatgctg-tcagctattttcattttgacacctttccggttggttcattgtag
||| |||||||||||| || ||||| || || || |||||||||||||||||| | |||   |||||||| |  |     |||| |||||    ||   |        ||  |  ||| |     |   |  |  |  |||   | | | |   |   || || ||||                                        
GCACTTATTCTCCAAATGCTTATCGAGGGTTCGCACGTGAGTTCATTAAAGATCTCGAAGCTATCAGgttctgacg---aacacaatttctctcgtcgatatgcctgtatc-tgtatgtacctgaga-atccttataatttaacacattctgggt--gtgttgatcag----------------------------------------