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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCAACGGTGTGGTTCTCAGTGCGGCTACCACCATCTGGCTCCCAGTTTCTCCACAAAATGTCTTCAATTTCTTCAGGGACGAAAGGACTCGGCCTCAGgtatatgcatgattgaattatatactaattggaaactactgttatgatatctttagtaacatgtgttaattttcttcacag

Basic information

species Vitis vinifera
transcript Vv17s0053g00780.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA16G34350.1 (Glycine max), 5'ss of exon 8
ACCCAACGGTGTGGTTCTCAGTGCGGCTACCACCATCTGGCTCCCAGTTTCTCCACAAAATGTCTTCAATTTCTTCAGGGACGAAAGGACTCGGCCTCAGgtatatgcatgattgaattatata-ctaattggaaactactgttatgatatctttagtaacatgtgttaattttcttcacag
||| || ||||||||||| ||||| ||||||||||| ||||||||  |  ||||||||| ||| ||||||||||| | ||| |||| ||   ||||||||||     |||| || | | |  |  || ||  ||   |       |     | ||  ||||||   ||    ||   |  ||
ACCTAATGGTGTGGTTCTAAGTGCAGCTACCACCATTTGGCTCCCCATCCCTCCACAAACTGTGTTCAATTTCTTTAAGGATGAAAAGAAAAGGCCTCAGgttgtgacatgtttaactcaattgtcttatctgatgttgtcaccttagatacgtttttaacattgtttttcgtttggcttag

upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G17920.1 (Arabidopsis thaliana), 5'ss of exon 8
ACCCAACGGTGTGGTTCTCAGTGCGGCTACCACCATCTGGCTCCCAGTTTCTCCACAAAATGTCTTCAATTTCTTCAGGGACGAAAGGACTCGGCCTCAGgta-tatgcatgattga-attat-atactaattggaaactactgttat------gatatctttagtaacatgtg-ttaatttt--cttcacag
||| || ||  |||||||  |||| || || |   ||||||||||  ||||||||||||| |||||||||||| |||  || || || ||||||||||||||| ||  ||   || | |||   |||  ||   |||     || | |       ||  |   ||| |||| |  ||  ||||   || | ||
ACCAAATGGAATGGTTCTATGTGCAGCCACAAGTTTCTGGCTCCCTATTTCTCCACAAAACGTCTTCAATTTCCTCAAAGATGAGAGAACTCGGCCTCAGgtactacacagacttaacattgccatagaaaccagaattatttggtgtttaattaatcacccgagtgacattttctttgttttggttttatag

upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G73360.1 (Arabidopsis thaliana), 5'ss of exon 8
ACCCAACGGTGTGGTTCTCAGTGCGGCTACCACCATCTGGCTCCCAGTTTCTCCACAAAATGTCTTCAATTTCTTCAGGGACGAAAGGACTCGGCCTCAGgtatatgcatgattgaatt----atatactaattggaaactactgttatgatatctttagtaacatgtgttaattttcttcacag-
||| |||||    || ||  |||| || |||||  ||||||| ||   |||||| |||||||||||||||||| |||  |||||||| || || |||||||||    ||  |    |||    || | |  |    | | |  | | || || | | || |      |  |  |||     ||   
ACCAAACGGCACAGTCCTATGTGCAGCCACCACTTTCTGGCTTCCCAATTCTCCTCAAAATGTCTTCAATTTCCTCAAAGACGAAAGAACCCGTCCTCAGgtaacaacaacacaagattcaaaatcttcatacgaaagattcatttgataatgtatatattgtttccttcttgtttgtgatactag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27579995|gb|CB002690.1|CB002690
EST:     CTCCACAAAATGTCTTCAATTTCTTCAGGGACGAAAGGACTCGGCCTCAG                         TGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCA
genomic: CTCCACAAAATGTCTTCAATTTCTTCAGGGACGAAAGGACTCGGCCTCAGgtatatgcat ... ttcttcacagTGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCA