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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATTAAAGTGATTGATTTTGGAAGCACAACATATGAGCGACAAGATCAGAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGgtatgccatcaaatatctgccattgtttttctgttgtcatgagtcagtatggtgttctaccattctttcaaattagttggccagatcacaggtttcttttaatgcccaaggaagacaagtggatatagttccttgctgatgaatacgctttttttcatgtttatgtag

Basic information

species Vitis vinifera
transcript Vv17s0000g09500.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os12g27520.1 (Oryza sativa), 5'ss of exon 8
GCTATTAAAGTGATTGATTTTGGAAGCACAACATATGAGCGACAAGATCAGAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGgtatgccatcaaatatctgccattgtttttctgttgtcatgagtcagtatggtgttctaccattctttcaaattagttggccagatcacaggtttcttttaatgcccaaggaagacaagtggatatagttccttgctgatgaatacgctttttttcatgtttatgtag
|||||||| |||||||||||||| |||||||||||||| |  || ||||||| |||  | || || ||  |||||||||| || ||||| |||||  | |||||             ||| |    ||  ||||   | ||| |  |  |  |||| ||| |||        |  ||||  | | |||                                                                                
GCTATTAAGGTGATTGATTTTGGCAGCACAACATATGACCAGCAGGATCAGACCTATGTGGTGTCTACTAGGCATTATCGAGCTCCAGAAGTTATCTTGGgtatttgtcttgcctagtgcaaagccttccctgtcagcgtgattatggtttatgtt-tacgattggaatggct--gttgttctgttcag-------------------------------------------------------------------------------

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G02740.3 (Glycine max), 5'ss of exon 7
GCTATTAAAGTGATTGATTTTGGAAGCACAACATATGAGCGACAAGATCAGAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGgtatgc---catcaaatatctgccattgtttttctgttgtcatgagtcagtatggtgttctaccattctttcaaattagttggccagatcacaggtttcttttaatgcccaaggaagacaag--tggatatagttccttgctgatgaatacgctttttttcatgtttatgtag
||||| || || ||||||||||| ||||| || ||||||||| ||||||||||||||||||||||||| || |||||| | || || || ||||| ||||||||     |||    ||  |||  | |      ||    | ||  | |  |  ||||| | | ||  |  ||      ||| |   ||||   |  |   |  |||       |||   |   |||  || ||   ||                                  
GCTATAAAGGTTATTGATTTTGGCAGCACCACTTATGAGCGAGAAGATCAGAACTACATTGTATCAACTCGTCATTATAGGGCTCCTGAAGTTATCCTTGgtatatacacatactgtacatgctgtggaaagaatgcctgcctgcctta--actgtgttttgc-atgttgacac-----ttgac--aatcatgagacttgctatatgtgtgctaaagttgattttggcaatggtgttttag--------------------------------

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 7
GCTATTAAAGTGATTGATTTTGGAAGCACAACATATGAGCGACAAGATCAGAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGgtatgccatcaaatatctgccattgtttttctgttgtcatgagtcagtatggtgttctaccattctttcaaattagttggccagatcacaggtttcttttaatgcccaaggaagacaagtggatatagttccttgctgatgaatacgctttttttcatgtttatgtag
||||| || || ||||||||||| ||||| || ||||||||| |||||||||| |||||||||||||| || |||||| | || || || ||||| ||||||||     || |   |||  | || | |             |||   |  ||||| | | ||  |  || || |      ||    |  || |   |  ||   | || |  ||    |||  ||  |   ||                                  
GCTATAAAGGTTATTGATTTTGGCAGCACCACTTATGAGCGAGAAGATCAGAATTACATTGTATCAACTCGTCATTATAGGGCTCCTGAAGTTATCCTTGgtatatatacata---ctgtaaatgctgtggaaagaatgcctgtcta-actgtgttttgc-atgttgacacatga--caatcatgagaagggctatatgcaag--ctaaagttgattt-tggcaatgatgttttag--------------------------------

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA06G18530.1 (Glycine max), 5'ss of exon 7
GCTATTAAAGTGATTGATTTTGGAAGCACAACATATGAGCGACAAGATCAGAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGgtatgccatcaaatatctgccattgtttttctgttgtcatgagtcagtatggtgttctaccattctttcaaattagttggccagatcacaggtttcttttaatgcccaaggaagacaagtggat-atagttccttgctgatgaatacgctttttttcatgtttatgtag
||||| ||||| ||||||||||| ||||| |||||||| ||| |||||||||  |||||||| |||||||| |||||| | || || || ||||| || ||||       ||||||     |    |  |  |   |  | | |  |||   | | ||   || ||| ||||  |  |||   | | |          | ||| |   |    | |||  |  |  |||                                        
GCTATAAAAGTTATTGATTTTGGCAGCACTACATATGAACGAGAAGATCAGACATACATTGTGTCAACACGTCATTATAGGGCACCTGAAGTTATCCTCGgtacat----aaatattcagtaaaaatgctacgagtttttaattgggtaca-tatgctgttatacttccaaaaca--tggt--gtttatgatgccaactgaatacttgatattggcaatggttttgtag----------------------------------------

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA04G36360.1 (Glycine max), 5'ss of exon 7
GCTATTAAAGTGATTGATTTTGGAAGCACAACATATGAGCGACAAGATCAGAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGgtatgccatcaaatatctgccattgtttttctgttgtcatgagtcagtatggtgttctaccattctttcaaattagttggccagatcacaggtttcttttaatgcccaaggaagacaagtggatatagttccttgctgatgaatacgctttttttcatgtttatgtag
||||| ||||| ||||||||||| ||||| |||||||| ||| |||||||||  |||||||| ||||| || |||||| | || || || ||||| |||||||       ||||||     | |  |  | || | |  | | |     || ||    |  || |   |  |||| |||       ||  |||||  |                                                                      
GCTATAAAAGTTATTGATTTTGGCAGCACTACATATGAACGAGAAGATCAGACTTACATTGTGTCAACTCGTCATTATAGGGCACCTGAAGTTATCCTTGgtacat----aaatattcagtaataatgctatgattttttaatt----gtgctg----ataatgccaactgattacttgatattggcaatggttttgtag--------------------------------------------------------------------

upper sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT4G24740.2 (Arabidopsis thaliana), 5'ss of exon 7
GCTATTAAAGTGATTGATTTTGGAAGCACAACATATGAGCGACAAGATCAGAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGgtatgccatcaaatatctgccattgtttttctgttgtcatgagtcagtatggtgttctaccattctttcaaattagttggccagatcacaggtttcttttaatgcccaaggaagacaagtggatatagttccttgctgatgaatacgctttttttcatgtttatgtag
|| || || |||||||||||||| |||||||| |||||||| || || || | |||||||||||||||  | |||||| | || ||||| || ||| | |||         | || ||             |||| | |  | ||| ||   | ||     ||     |||| |  | |     | ||  |  || | |  |                                                                  
GCAATAAAGGTGATTGATTTTGGTAGCACAACTTATGAGCGCCAGGACCAAACCTACATTGTATCAACCAGACATTATAGGGCACCAGAAGTCATTTTAGgtg--------agtagct-----------cttgttataaaaactcattaaaatttttagatatca---caaacttatgga--gaaacattgccttgtgtgcag-----------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30322713|gb|CD005975.1|CD005975
EST:     GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTG                         GGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
genomic: GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGgtatgccatc ... gtttatgtagGGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
EST: gi|222357016|gb|GH717878.1|GH717878
EST:     GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTG                         GGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
genomic: GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGgtatgccatc ... gtttatgtagGGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
EST: gi|110373955|gb|EC938383.1|EC938383
EST:     GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTG                         GGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
genomic: GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGgtatgccatc ... gtttatgtagGGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
EST: gi|71886247|gb|DT035302.1|DT035302
EST:     GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTG                         GGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
genomic: GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGgtatgccatc ... gtttatgtagGGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
EST: gi|110362754|gb|EC926306.1|EC926306
EST:     GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTG                         GGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
genomic: GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGgtatgccatc ... gtttatgtagGGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
EST: gi|71889805|gb|DT038860.1|DT038860
EST:     GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTG                         GGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
genomic: GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGgtatgccatc ... gtttatgtagGGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
EST: gi|32272087|gb|CD721246.1|CD721246
EST:     GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTG                         GGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
genomic: GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGgtatgccatc ... gtttatgtagGGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
EST: gi|32268109|gb|CD717268.1|CD717268
EST:     GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTG                         GGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
genomic: GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGgtatgccatc ... gtttatgtagGGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
EST: gi|30255726|gb|CB971858.1|CB971858
EST:     GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTG                         GGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
genomic: GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGgtatgccatc ... gtttatgtagGGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
EST: gi|30324825|gb|CD008087.1|CD008087
EST:     GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTG                         GGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
genomic: GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGgtatgccatc ... gtttatgtagGGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
EST: gi|32268970|gb|CD718129.1|CD718129
EST:     GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTG                         GGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
genomic: GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGgtatgccatc ... gtttatgtagGGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
EST: gi|32248754|gb|CD714573.1|CD714573
EST:     GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTG                         GGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG
genomic: GAACTACATTGTATCAACACGGCATTATCGTGCGCCAGAGGTTATTCTTGgtatgccatc ... gtttatgtagGGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGG