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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGTTACCCACTCTGTGGGTAATTGTGTTAAGCGGGTGGTGGTCATTGTTACTTCTGTTCTCTTCTTCCGCACCCCTGTTTCACCGGTCAACTCATTGGgtaaaattaactgcatctgattttccatccatcttttagaatatcattttcatgttataagaaatatttttcctgggctttcactgtag

Basic information

species Vitis vinifera
transcript Vv17s0000g08560.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g08560.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA06G19250.1 (Glycine max), 5'ss of exon 8
CCAGTTACCCACTCTGTGGGTAATTGTGTTAAGCGGGTGGTGGTCATTGTTACTTCTGTTCTCTTCTTCCGCACCCCTGTTTCACCGGTCAACTCATTGGgtaaaattaactgcatctgattt--tccatccatctttt--agaatatcattttcatgttataagaaatatttttcctgggctttcactgtag-------------------------------
|| |||||||||||||||||||||||||| |||||||| ||||||||||| |  |||||  |||||||||  || ||||| ||||| || ||  | || |||||| ||   |   |||| |||   |     | | |||  ||||| |  ||||    || |   ||  |||     |     |||||    |                               
CCTGTTACCCACTCTGTGGGTAATTGTGTGAAGCGGGTTGTGGTCATTGTGAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgcttctttctggtttgaactggaaaacatttgaagaattttgttttggaattctcttaaccattgaatatctctcttcacacctgttgctgatatttttatattatttttctacag

upper sequence: Vv17s0000g08560.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA04G35730.1 (Glycine max), 5'ss of exon 8
CCAGTTACCCACTCTGTGGGTAATTGTGTTAAGCGGGTGGTGGTCATTGTTACTTCTGTTCTCTTCTTCCGCACCCCTGTTTCACCGGTCAACTCATTGGgtaaaattaactgcatctgattt---tccatccatcttttagaatatcattttcatgttataagaaatatttttcctgggctttcactgtag------------------------------
|| ||||||||||| ||||| || ||||| |||||||| ||||||||||| |  |||||  |||||||||  || ||||| ||||| || ||  | || |||||| ||   |   |||| |||   |      |  ||| | ||| |  ||   |  || |   ||| |||     |     |||||    |                              
CCTGTTACCCACTCCGTGGGCAACTGTGTGAAGCGGGTTGTGGTCATTGTGAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGgtaaagttgcttctttctggtttgaattggaaaacatttgaaaatttgtttcaaaatttttcttaaacattgaatatctctcttcacgcctgttgctaatatttttatattattttctacag