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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGGGTAATCCCAGATGGTGCTGCACTTATCTTCTTGATGCAACTGATCCCTTATTCATTGAAATTGGGAAAGCTTTCATCCAGCAACAATTGAAAGgtgaactcatctagatcatcacgaaccccttttaagtttgtttctgcatgtagttggctaccatacttgtataactcatgctaaaaaattttcttgtttctatttttcatttggaataacctttttgatcag

Basic information

species Vitis vinifera
transcript Vv17s0000g07680.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g07680.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os04g55730.1 (Oryza sativa), 5'ss of exon 8
GTTGGGGGTAATCCCAGATGGTGCTGCACTTATCTTCTTGATGCAACTGATCCCTTATTCATTGAAATTGGGAAAGCTTTCATCCAGCAACAATTGAAAGgtg-aactcatctagatcatcacgaaccccttttaagtttgtttctgcatgtagttggctaccatacttgtataactcatgctaaaaaattttcttgtttctatttttcatttggaataacctttttgatcag
||||   | || ||||| ||||| ||||| |||||||| |||||| |||||||||||||  | |||||||||||   ||| ||  |  ||||| | | ||||  ||  |||   |||   ||| |  |    ||||   || ||| | ||            |||  || ||   || |  |||||    || ||   |   |   ||||                       
GTTGACAGCAACCCCAGGTGGTGTTGCACATATCTTCTGGATGCATCTGATCCCTTATTTGTAGAAATTGGGAAGCTTTTTATTGAAGAACAAATCAGAGgtataatgcat---gatttccacta--cttaattaatggtgcttcagtatcagacctaaagtcatgttt-tagttctgaaactaaa----ttcctaactagaaaagttca-----------------------

upper sequence: Vv17s0000g07680.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G443903_T03 (Zea mays), 5'ss of exon 8
GTTGGGGGTAATCCCAGATGGTGCTGCACTTATCTTCTTGATGCAACTGATCCCTTATTCATTGAAATTGGGAAAGCTTTCATCCAGCAACAATTGAAAGgtgaactcatctagatcatcacgaaccccttttaagtttgtttctgcatgtagttggctaccatacttgtataactcatgctaaaaaattttcttgtttctatttttcatttggaataacctttttgatcag
||||   | ||||| || ||||||||||| ||||||||||||||| ||||||| |||||  | |||||||||||    || ||  |  | ||| | | ||||    ||   ||  |  |           | ||| ||  | |    |  || ||   |  || ||  ||| | ||  ||| |      || | |      |   |                          
GTTGACAGCAATCCAAGGTGGTGCTGCACATATCTTCTTGATGCATCTGATCCTTTATTTGTAGAAATTGGGAAGATGTTTATAGAAGAGCAAATCAGAGgtaggatctgttattttgtgcaagttgatgtctaacttcatgtgca-agatattttaatgtcagacccgta-atcttgtgcca------ttccctaccataagagtga------------------------